1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgtgcactggtgatcgtttcagtttgtagtatgtagctgtgttgttccaaattctgaaacaattgcccctggtacgtttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTGGAGATACGATACCACCGATGATATATCTGAAGAGGTGCTGCGGGCATC
species | Zea mays |
transcript | GRMZM2G151268_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|45847355|gb|CN071298.1|CN071298
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|4647161|gb|AI622236.1|AI622236
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|21432449|gb|BQ547939.1|BQ547939
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|91049337|gb|EB159755.1|EB159755
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|23357627|gb|BU645276.1|BU645276
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|60359679|gb|DN226652.1|DN226652
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|32909956|gb|CF014768.1|CF014768
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|78122445|gb|DV540829.1|DV540829
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCNNNNNNNCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACCCAAGGAAAGATGAGTACAACTEST: gi|89106102|gb|DY576319.1|DY576319
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|47961828|gb|CN844537.1|CN844537
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATTTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|26557650|gb|CA829885.1|CA829885
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTTTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|94478768|gb|EB707726.1|EB707726
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCCGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|60399998|gb|DN232805.1|DN232805
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTTGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|211144130|gb|FL475584.1|FL475584
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|12971760|gb|BG267644.1|BG267644
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|15323531|gb|BI478753.1|BI478753
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|21809549|gb|BQ667867.1|BQ667867
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|211191649|gb|FL029190.1|FL029190
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|211194039|gb|FL029192.1|FL029192
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|60348471|gb|DN215444.1|DN215444
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|29945211|gb|CB815526.1|CB815526
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTEST: gi|211191650|gb|FL029191.1|FL029191
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
EST: ACCTATCTCTTCTTCGCAGCAGGCATCAG ATCGCANAAGGGGGTCTTCAGTTTCCAACACAANGARAGATGAGTACAACT
genomic: ACCTATCTCTTCTTCGCAGCAGGCATCAGgtttgtgcac ... ttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACT
gtagctgtgttgttccaaattctgaaacaattgcccctggtacgtttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTGGAGATACGATACCACCGATGATATATCTGAAGAGGTGCTGCGGGCATC
tttactttc CT-rich tract
aaacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgcactggtgatcgtttcagtttgtagtatgtagctgtgttgttccaaattctgaaacaattgcccctggtacgtttactttcagATCGCAGAGGGGGGTCTTCAGTTTCCAACACAAGGAAAGATGAGTACAACTGGAGATACGATACCACCGATGATATATCTGAAGAGGTGCTGCGGGCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC