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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgctatctacatgtgtatcccttgtcgataagtgctctatggttttatctgtactcataagtcttgttatgtagGAAGCTGTCACTTCAAAGGGATTAAGAGATGATACTACTTGCATAGTAGTTGACATACTACCTCCAGAAAAGTTAAGCCCCCCACTAAAGCGACCTGGAA

Basic information

species Zea mays
transcript GRMZM2G150213_T04
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150213_T05 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g27780.1 (Oryza sativa), 3'ss of exon 6
-------------------gtactgctatctacatgtgtatcccttgtcgataagtgctcta--tggttttatctgtactcataagtcttgttatgtagGAAGCTGTCACTTCAAAGGGATTAAGAGATGATACTACTTGCATAGTAGTTGACATACTACCTCCAGAAAAGTTAAGCCCCCCACTAAAGCGACCTGGAA
                    | | | | | |   | || || ||||||  ||   || |  |  |    ||| | ||   ||| | |||| |||| |||||| |||| | |||||||||| || ||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||| |||||   | ||| |
gtattgaaatatatttacacttcagttgtattattctggattccttgt-aatgcatgtttaagttaagcttaccggt---catga-tcttcttatatagGAATCTGTGAGTTCAAAGGGACTACGAGATGATACTACTTGCATCGTAGTTGACATATTACCTCCAGAAAAGTTGAGCCCTCCATTAAAGAAGCATGGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgtcgataagtgctctatggttttatctgtactcataagtcttgttatgtagGAAGCTGTCACTTCAAAGGGATTAAGAGATGATACTACTTGCATAGTAGTTGACATACTACCTCCAGAAAAGTTAAGCCCCCCACTAAAGCGACCTGGAA
                                          tcttgtt  CT-rich tract
                       ttttatct  TA-rich tract