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gtaatacaccttgaaccgatgccttctctggcggttttattcggatctgtttcagccgggggtttcactcgtttggattcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG
species | Zea mays |
transcript | GRMZM2G147882_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|32924156|gb|CF028968.1|CF028968
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|32924444|gb|CF029256.1|CF029256
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|32858736|gb|CD998417.1|CD998417
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|78117759|gb|DV536146.1|DV536146
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: CTACGGCCTGATAACTCTCCTNGGCA-CCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|93014970|gb|EB640490.1|EB640490
genomic: CTACGGCCTGATAACTCTCCT-GGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: CTACGGCCTGATAACTCTCCTGGGCA-CCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACEST: gi|32923806|gb|CF028618.1|CF028618
genomic: CTACGGCCTGATAACTCTCCTGG-CAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGAC
EST: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|32924110|gb|CF028922.1|CF028922
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAGCTGTGGGAATACGTAGCTCCGEST: gi|71299018|gb|DR785501.1|DR785501
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: ATTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGTTCAGCTTCAACTGTGGGAATACGTAGCTCCGEST: gi|32923874|gb|CF028686.1|CF028686
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|32924334|gb|CF029146.1|CF029146
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|32923638|gb|CF028450.1|CF028450
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|76287314|gb|DV026882.1|DV026882
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|71429425|gb|DR810475.1|DR810475
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|32858735|gb|CD998416.1|CD998416
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: GTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|32923912|gb|CF028724.1|CF028724
genomic: GTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: ACTACAGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|32923869|gb|CF028681.1|CF028681
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|32923708|gb|CF028520.1|CF028520
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|32924079|gb|CF028891.1|CF028891
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|74241069|gb|DT648983.1|DT648983
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
cggttttattcggatctgtttcagccgggggtttcactcgtttggattcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG
ttcctgc CT-rich tract
ttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatacaccttgaaccgatgccttctctggcggttttattcggatctgtttcagccgggggtttcactcgtttggattcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC