1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatacaccttgaaccgatgccttctctggcggttttattcggatctgtttcagccgggggtttcactcgtttggattcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG
species | Zea mays |
transcript | GRMZM2G147882_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|32858736|gb|CD998417.1|CD998417
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|78117759|gb|DV536146.1|DV536146
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: CTACGGCCTGATAACTCTCCTNGGCA-CCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGEST: gi|93014970|gb|EB640490.1|EB640490
genomic: CTACGGCCTGATAACTCTCCT-GGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: CTACGGCCTGATAACTCTCCTGGGCA-CCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACEST: gi|32924110|gb|CF028922.1|CF028922
genomic: CTACGGCCTGATAACTCTCCTGG-CAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGAC
EST: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA ATATGCAAGGACAAGAACGCTCAGCCTCAGCTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
cggttttattcggatctgtttcagccgggggtttcactcgtttggattcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG
ttcctgc CT-rich tract
ttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatacaccttgaaccgatgccttctctggcggttttattcggatctgtttcagccgggggtttcactcgtttggattcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCGTTGAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC