Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttatgctatcttatgttcatttttccttgccagcttattgttctctcctgtgttgtccattcattcatttttcttgtttttgctattgtgcagCTTATCGGTTCGGAGAATTGCTGGATGGCCGTTATGAAATCATAGCAGCACATGGGAAGGGTGTGTTCTCAACAGTTGTGCGGGCAAAAGATCTTAAAGC

Basic information

species Zea mays
transcript GRMZM2G147811_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147811_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os12g44330.2 (Oryza sativa), 3'ss of exon 6
------------gtaagttatgctatcttatgttcatttttccttgccagct-----tattgttctctcctgtgttgt--ccattcattcatttttcttgtttttgcta--ttgtgcagCTTATCGGTTCGGAGAATTGCTGGATGGCCGTTATGAAATCATAGCAGCACATGGGAAGGGTGTGTTCTCAACAGTTGTGCGGGCAAAAGATCTTAAAGC
             || | ||  ||      | ||  ||||   |||  | ||      |     || | || || |||  |||||  ||    || ||   || ||| |   | ||||||||| || || || |||||||||||||| || ||||| || | |||||||||||| ||||| ||||| ||||||||||| || |||||||||||||||||
gtaagttccaccatatgctaaccttctcccttttagttttcttttgttaactgtggtcaacaaactattctttgctgtgtccatttgtttccattcctaacttatgcaaaactttgcagCTTACCGTTTTGGGGAATTGCTGGATGGGCGCTATGAGATTACAGCAGCACATGGAAAGGGAGTGTTTTCAACAGTTGTCCGAGCAAAAGATCTTAAAGC

upper sequence: GRMZM2G147811_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA01G20810.1 (Glycine max), 3'ss of exon 8
-----gtaagttatgcta-tcttatgttcatttttccttgccagcttattgttctctcctgtgttgtccattcattcatttttcttgtttttgctattgtgcagCTTATCGGTTCGGAGAATTGCTGGATGGCCGTTATGAAATCATAGCAGCACATGGGAAGGGTGTGTTCTCAACAGTTGTGCGGGCAAAAGATCTTAAAGC
     ||  ||  ||| | |   | ||  |   |  ||||    |  |    | |   |||| || ||  |||| |   || | |||   | |  ||| ||||| ||| |  ||||| ||| | ||  ||||||| |||||| |||| ||||| ||||||| |||||| || ||| |||| || ||||||||||||||||||  
ttggggtgtgtcctgccaataagacgtggaaaatctcttggggtcagaacaatatgatctgt-ttttctgttcagt--gttatattgccat-gtaattttgcagGTTACCATTTCGGTGAAGTACTTTATGGCCGATATGAAGTCATTGCAGCTCATGGGAGGGGTGTCTTTTCAGCAGTGGTCCGGGCAAAAGATCTTAAAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67021773|gb|CO450522.1|CO450522
EST:     TGAGAGAAATGCTCTTCATGACAACTGGGATGATGCAGATGGGTACTACA                         CTTATCGGTTCGGAGAATTGCTGGATGGCCGTTATGAAATCATAGCAGCAC
genomic: TGAGAGAAATGCTCTTCATGACAACTGGGATGATGCAGATGGGTACTACAgtaagttatg ... tattgtgcagCTTATCGGTTCGGAGAATTGCTGGATGGCCGTTATGAAATCATAGCAGCAC
EST: gi|32827079|gb|CD966757.1|CD966757
EST:     TGAGAGAAATGCTCTTCATGACAACTGGGATGATGCAGATGGGTACTACA                         CTTATCGGTTCGGAGAATTGCTGGATGGCCGTTATGAAATCATAGCAGCAC
genomic: TGAGAGAAATGCTCTTCATGACAACTGGGATGATGCAGATGGGTACTACAgtaagttatg ... tattgtgcagCTTATCGGTTCGGAGAATTGCTGGATGGCCGTTATGAAATCATAGCAGCAC
EST: gi|160481614|gb|EY254446.1|EY254446
EST:     TGAGAGAAATGCTCTTCATGACAACTGGGATGATGCAGATGGGTACTACA                         CTTATCGGTTCGGAGAATTGCTGGA
genomic: TGAGAGAAATGCTCTTCATGACAACTGGGATGATGCAGATGGGTACTACAgtaagttatg ... tattgtgcagCTTATCGGTTCGGAGAATTGCTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttctctcctgtgttgtccattcattcatttttcttgtttttgctattgtgcagCTTATCGGTTCGGAGAATTGCTGGATGGCCGTTATGAAATCATAGCAGCACATGGGAAGGGTGTGTTCTCAACAGTTGTGCGGGCAAAAGATCTTAAAGC
                         ttcatttttcttgttt  CT-rich tract
                            atttttcttgttttt  TA-rich tract