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...atcttctatttctactatttgtattgtatattatttatttgtattaatagttgatgtagttcaagtggacgtcagaaggctaacatagctgtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTGCTTCAGGATCTGCAGCTGTGACTGACTCCGCTATGGCAGAAGCTGGTG
species | Zea mays |
transcript | GRMZM2G147671_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTEST: gi|89252647|gb|DY624433.1|DY624433
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
EST: GGTGACAAGCAAGAACAGCCAAAG GATGATGACGATTTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTEST: gi|9254597|gb|BE345080.1|BE345080
genomic: GGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGEST: gi|33094256|gb|CF054250.1|CF054250
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCG
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCAEST: gi|60350002|gb|DN216975.1|DN216975
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCA
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTEST: gi|18964426|gb|BM660999.1|BM660999
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTEST: gi|24767864|gb|CA403000.1|CA403000
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTEST: gi|60401369|gb|DN234176.1|DN234176
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTEST: gi|32849896|gb|CD989577.1|CD989577
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGEST: gi|32942828|gb|CF047647.1|CF047647
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTG
EST: CAGAACTTGCCTCANATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGEST: gi|4388150|gb|AI491322.1|AI491322
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAG
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTEST: gi|22542686|gb|BU093124.1|BU093124
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTEST: gi|76910327|gb|DV163809.1|DV163809
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTEST: gi|5846870|gb|AI999953.1|AI999953
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTEST: gi|32849329|gb|CD989010.1|CD989010
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGEST: gi|60400076|gb|DN232883.1|DN232883
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATG
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTEST: gi|37384426|gb|CF629283.1|CF629283
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTEST: gi|78021348|gb|DV489735.1|DV489735
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
EST: CAGAACTTGCTTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTEST: gi|60352483|gb|DN219456.1|DN219456
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTEST: gi|18659918|gb|BM500591.1|BM500591
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGANAAGCAAGAACAGCCAAAG GNTGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGGAGGGCEST: gi|67030433|gb|CO459182.1|CO459182
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGG-AGGGC
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTEST: gi|60395593|gb|DN228463.1|DN228463
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTEST: gi|87152942|gb|DY397731.1|DY397731
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTEST: gi|9733092|gb|BE511844.1|BE511844
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
EST: ACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTEST: gi|9952492|gb|BE639075.1|BE639075
genomic: ACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAG GATGATGACGATCTACTACAGCAGGCACTTEST: gi|4804535|gb|AI665407.2|AI665407
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTT
EST: CAGAACTTGCCTCAAATGCTGCTGCTGGTG-CAAGCAAGAACAGCCAAAG GATGATGACGATCTA-TCCAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
genomic: CAGAACTTGCCTCAAATGCTGCTGCTGGTGACAAGCAAGAACAGCCAAAGgtattttcag ... gtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGT
aatagttgatgtagttcaagtggacgtcagaaggctaacatagctgtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTGCTTCAGGATCTGCAGCTGTGACTGACTCCGCTATGGCAGAAGCTGGTG
ggctaac putative branch site (score: 290)
taacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcttctatttctactatttgtattgtatattatttatttgtattaatagttgatgtagttcaagtggacgtcagaaggctaacatagctgtgaccacagGATGATGACGATCTACTACAGCAGGCACTTGCAATGTCAATGGAGGGCGGTGCTTCAGGATCTGCAGCTGTGACTGACTCCGCTATGGCAGAAGCTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG