1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atcaataaccgaagccagcacatatactttatttcctgaaatcggtagtgtttgaaaaggaaatgtatttttattaatttctgcatttgaatgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGGAGGAGGAAGGAGATTATTATAACAGAGGGCGCGGGAGAGGGCGGCTACG
species | Zea mays |
transcript | GRMZM2G146472_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGTGGTGGTGGCAGAAGAGGCAGGGGAANAG GCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGGEST: gi|89755184|gb|DY685709.1|DY685709
genomic: CGTGGTGGTGGCAGAAGAGGCAGGGGAAGAGgtatgttctc ... atgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGG
EST: GCAGAAGAGGCAGGGGAAGAG GCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGGEST: gi|149010217|gb|EE042036.2|EE042036
genomic: GCAGAAGAGGCAGGGGAAGAGgtatgttctc ... atgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGG
EST: TGGAAGAGGACGTGGTGGTGGCAGAAGAGGCAGGGGAAGAG GCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGGEST: gi|60346152|gb|DN213125.1|DN213125
genomic: TGGAAGAGGACGTGGTGGTGGCAGAAGAGGCAGGGGAAGAGgtatgttctc ... atgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGG
EST: CAGAAGAGGCAGGGGAAGAG GCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGGEST: gi|60401473|gb|DN234280.1|DN234280
genomic: CAGAAGAGGCAGGGGAAGAGgtatgttctc ... atgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGG
EST: CAGGGGAAGAG GCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGGEST: gi|15632650|gb|BI679743.1|BI679743
genomic: CAGGGGAAGAGgtatgttctc ... atgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGG
EST: CACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCAGGGGAAGAG GCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGGEST: gi|60350971|gb|DN217944.1|DN217944
genomic: CACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCAGGGGAAGAGgtatgttctc ... atgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGG
EST: CACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCAGGGGAAGAG GCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGGEST: gi|149109057|gb|EE189984.2|EE189984
genomic: CACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCAGGGGAAGAGgtatgttctc ... atgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGG
EST: CACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCAGGGGAAGAG GCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTAEST: gi|60357376|gb|DN224349.1|DN224349
genomic: CACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCAGGGGAAGAGgtatgttctc ... atgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTA
EST: GTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCAGGGGAAGAG GCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGGEST: gi|60396096|gb|DN228965.1|DN228965
genomic: GTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCAGGGGAAGAGgtatgttctc ... atgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGG
EST: GCAGAAGAGGCAGGGGAAGAG GCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGGEST: gi|60343821|gb|DN210794.1|DN210794
genomic: GCAGAAGAGGCAGGGGAAGAGgtatgttctc ... atgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGG
EST: CACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCAGGGGAAGAG GCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGGEST: gi|60355626|gb|DN222599.1|DN222599
genomic: CACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCAGGGGAAGAGgtatgttctc ... atgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGG
EST: CGTGGTGGTGGCAGAAGAGGCAGGGGAAGAG GCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGGEST: gi|71756347|gb|DR954284.1|DR954284
genomic: CGTGGTGGTGGCAGAAGAGGCAGGGGAAGAGgtatgttctc ... atgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGG
EST: CACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCAGGGGAAGAG GCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGGEST: gi|60398720|gb|DN231536.1|DN231536
genomic: CACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCAGGGGAAGAGgtatgttctc ... atgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGG
EST: CACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCAGGGGAAGAG GCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGGEST: gi|60337039|gb|DN204012.1|DN204012
genomic: CACTGGTCGTGGAAGAGGACGTGGTGGTGGCAGAAGAGGCAGGGGAAGAGgtatgttctc ... atgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGG
EST: TGGAAGAGGACGTGGTGGTGGCAGAAGAGGCAGGGGAAGAG GCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGGEST: gi|60350068|gb|DN217041.1|DN217041
genomic: TGGAAGAGGACGTGGTGGTGGCAGAAGAGGCAGGGGAAGAGgtatgttctc ... atgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGG
EST: AGGCAGGGGAAGAG GCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGG
genomic: AGGCAGGGGAAGAGgtatgttctc ... atgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGG
tagtgtttgaaaaggaaatgtatttttattaatttctgcatttgaatgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGGAGGAGGAAGGAGATTATTATAACAGAGGGCGCGGGAGAGGGCGGCTACG
tattaat putative branch site (score: 1999)
tttgaaaaggaaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcaataaccgaagccagcacatatactttatttcctgaaatcggtagtgtttgaaaaggaaatgtatttttattaatttctgcatttgaatgtgcacagGCATGAGCAATGGCCCCCCTCCACCTGCTTATGGTTACAACGAAGAGTGGGAGGAGGAAGGAGATTATTATAACAGAGGGCGCGGGAGAGGGCGGCTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - -gccagca
- - - - - - - - - - - - - - - - - - - - - - - -gtgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcatt