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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtagctaaagtgcattccgctgcacgtgcgcgtatgtatatatggtatggaatcgtgtggctggcgtgacattttccgtcagcgtattcattcatcagGTGACCTGGGTCGAGCACATGGAGATCGAGGATCGGGTTCCCATCCACCTGCTCTACCGCGACCTCGTCCTCAGCGGGGCGGCGTTCGGCGCGCACCGTT

Basic information

species Zea mays
transcript GRMZM2G145690_T02
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148999587|gb|EE036565.2|EE036565
EST:     GCCTCCCGTCGGGATGCCTCATCGCCGACATGGCCGACGGCTCGTCCAAG                         GTGACCTGGGTCGAGCACATGGAGATCGAGGATCGGGTTCCCATCCACCTG
genomic: GCCTCCCGTCGGGATGCCTCATCGCCGACATGGCCGACGGCTCGTCCAAGgtactgtagc ... cattcatcagGTGACCTGGGTCGAGCACATGGAGATCGAGGATCGGGTTCCCATCCACCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtatggaatcgtgtggctggcgtgacattttccgtcagcgtattcattcatcagGTGACCTGGGTCGAGCACATGGAGATCGAGGATCGGGTTCCCATCCACCTGCTCTACCGCGACCTCGTCCTCAGCGGGGCGGCGTTCGGCGCGCACCGTT
                                           ttcattc  CT-rich tract
                                         tattcatt  TA-rich tract