1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agccacggtactttctttgctgccaaatccgaagtttgtttgtgtgcatgttttaagatgggcgatggaggctgattatacattctccatgtttgggcagGGTTGATACATTCTCCATGTTTTAAGGAAACACAGAACGCACGCAAAAATATCCAGGCTGTGATGCTAGCGAACCTGGGTCCTCAAGTTTTTTCTGCATC
species | Zea mays |
transcript | GRMZM2G145213_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGAAGCATCCAAGGGTAACGGCGATGTCGACATGGAG GGTTGATACATTCTCCATGTTTEST: gi|71444597|gb|DR825647.1|DR825647
genomic: GTGAAGCATCCAAGGGTAACGGCGATGTCGACATGGAGgtacggcgcc ... gtttgggcagGGTTGATACATTCTCCATGTTT
EST: GTGAAGCATCCAAGGGTAACGGCGATGTCGACATGGAG GGGTGATACATTCTCCATGTTTTAAGGAAACACAGAACGCACGCAAAAATA
genomic: GTGAAGCATCCAAGGGTAACGGCGATGTCGACATGGAGgtacggcgcc ... gtttgggcagGGTTGATACATTCTCCATGTTTTAAGGAAACACAGAACGCACGCAAAAATA
gcatgttttaagatgggcgatggaggctgattatacattctccatgtttgggcagGGTTGATACATTCTCCATGTTTTAAGGAAACACAGAACGCACGCAAAAATATCCAGGCTGTGATGCTAGCGAACCTGGGTCCTCAAGTTTTTTCTGCATC
ggctgat putative branch site (score: 751)
attatacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agccacggtactttctttgctgccaaatccgaagtttgtttgtgtgcatgttttaagatgggcgatggaggctgattatacattctccatgtttgggcagGGTTGATACATTCTCCATGTTTTAAGGAAACACAGAACGCACGCAAAAATATCCAGGCTGTGATGCTAGCGAACCTGGGTCCTCAAGTTTTTTCTGCATC
- - - - - - - - ttgctgc
- - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggctgat