Sequence
atgc intronic sequence ATGC exonic sequencegtatggctaacctaatgcgttgttcatgaggctactctgctgctcttatttgtctaattcaactccatatgccctatgtgacagATGGGAAGATTGAATGAAGGGTTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATCTGTACAGGATTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G144254_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g31874.1 (Oryza sativa), 3'ss of exon 9
---------------gtatg-gctaacctaatgcgttgttcatgaggctact-------ctgctgctcttatt-tgtctaattcaactccatatgccctatgtgacagATGGGAAGATTGAATGAAGGGTTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATCTGTACAGGATTTG
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gtaattaagctaattgcaggcactaacctaaagcgttgttctttggacttctgttcatgccattgcgataataattttttttctaatttaaccttctctgtgtcacagATGGCGAGATTGAATGAAGGCCTGTCTCTTTTTGATGCAATACTGATTGTTCCAATGTTTCAGATTGCTTGGACCTTTTTTTCTATTTGCACAGGATTTG
upper sequence: GRMZM2G144254_T03 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA02G07510.2 (Glycine max), 3'ss of exon 10
----------------------------------------gtatggctaacctaatgcgttgttcatgaggctactctgctgctcttatttgtctaattcaactccatatg--------ccctatgtgacagATGGGAAGATTGAATGAAGGGTTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATCTGTACAGGATTTG
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gtaaggctttttcttgggtaaagattctttgttgggctttatcaatttgtgctaatgttttgatgaggtaact-ttttgaagttaatttttgacaaatgtgaatgctaacgaagccttttccaattgtgcagATGACCAGGTTGAATGAAGGACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTA
upper sequence: GRMZM2G144254_T03 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA16G26550.1 (Glycine max), 3'ss of exon 10
-----------------------------------gtatggctaacctaatgcgttgttc--atgaggctactctgctgctcttatttgt--ctaat-------tcaactccatatgccctatgtg-acagATGGGAAGATTGAATGAAGGGTTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATCTGTACAGGATTTG
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gtaaggctttttctttggtaaagattctttgttgggctttatcaatttgtgctgatgttttgatggggtaactttttgaagttaatttatgacaaatgtgaatgctaacccggtcttttccaattgtgcagATGACCAGGTTGAATGAAGGACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAACATGGACTTTCTTCTCAATCTGTACAGGATTTA
upper sequence: GRMZM2G144254_T03 (Zea mays), 3'ss of exon 6
lower sequence: AT3G26670.1 (Arabidopsis thaliana), 3'ss of exon 9
--------------------gtatggctaacctaatgcgttgttcatgaggctactctgctgctcttatttgtctaattcaactccatatgc-cctatgtgacagATGGGAAGATTGAATGAAGGGTTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATCTGTACAGGATTTG
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gtaaaaaaaaacctcaagctactgaaatattttggtgctttgtt-gtgccgttgagactatatagttactgaagtaaaaacgtctttcatgtgcttctgttgcagATGACAAGATTGAATGAAGGATTGTCTCTATATGATGCAATTCTCATAGTTCCAATGTTTCAGATTGCTTGGACTTTCTTCTCCATCTGTACAGGATGCA
upper sequence: GRMZM2G144254_T03 (Zea mays), 3'ss of exon 6
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 3'ss of exon 9
-------------gtatggctaacctaatgcgttgttcatgaggctactctgctgctcttatttgtctaattcaactccatatgc---cctatgtgacagATGGGAAGATTGAATGAAGGGTTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATCTGTACAGGATTTG
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agagagaaaaagaaaaaagaaacaaaaaaaaatcaatgctgcaattggttggacatgttaaattttgcaaacaactgatatatattatctccttctgcagATGGCAAGGTTGAACGAAGGGTTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAAATTGCTTGGACTTTCTTCTCTATTTGTACAGGATTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78022546|gb|DV490933.1|DV490933EST: GGTTCACATACTCAATTGTTCTTCTGTTTCTGTGTACCGCTGGATTTTGG ATGGGAAGATTGAATGAAGGGTTGTCATTATTTGATGCAATACTGATTGTT
genomic: GGTTCACATACTCAATTGTTCTTCTGTTTCTGTGTACCGCTGGATTTTGGgtatggctaa ... tatgtgacagATGGGAAGATTGAATGAAGGGTTGTCATTATTTGATGCAATACTGATTGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggctactctgctgctcttatttgtctaattcaactccatatgccctatgtgacagATGGGAAGATTGAATGAAGGGTTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATCTGTACAGGATTTG
gtctaat putative branch site (score: 3)
ttatttgtctaatt TA-rich tract