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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattgtttatgtttcatatgtttgcaatatgagaatacaacttgtgactagacttccagtggtgcctgtttagtaactgcatgatttggattctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTAGGGGCGTCACCGTCTTCTGAATCTAGAATGTTGAGGACAAAAGCTGCAG

Basic information

species Zea mays
transcript GRMZM2G143651_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143651_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g57180.2 (Oryza sativa), 3'ss of exon 4
-tattgtttatg--tttcatatgtttgcaatatgagaatacaacttgtgactagacttccagtggtgcctgtttagtaactgcatgatttggattctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTAGGGGCGTCACCGTCTTCTGAATCTAGAATGTTGAGGACAAAAGCTGCAG
 |||  ||| |   |||| | |   ||||  |||| |||| || |     | |||||||   || || |||  || ||||||  | ||  ||| | | |||||||| | |||||||||||||||||||| ||||||||||||||||||| |||||| || ||  | ||||||   ||||||||| ||||| | || ||||| |
ctatcatttgtaactttctttttgctgcatcatgacaatataattcccatcaagacttcttttg-tggctggctattaactgtgttat--ggactatgcacagATTTCAAAGGAGCATGGGGGTATCATGAGATTTATCCAGGTTTCTTCCCTAGGAGCATCGGCCTCTTCTCCTTCTAGAATGCTGAGGGCCAAGGCTGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32926106|gb|CF030918.1|CF030918
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATTCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|32926653|gb|CF031465.1|CF031465
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATTCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|71533831|gb|DR784590.1|DR784590
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCACGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|211398057|gb|FL169339.1|FL169339
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTTAGGAGCATGGGGGTATCATAAGATTTATCC
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCC
EST: gi|67037324|gb|CO464172.1|CO464172
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|31348826|gb|CD433183.1|CD433183
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATTCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|149074514|gb|EE162909.2|EE162909
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|148939122|gb|EC883548.2|EC883548
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|31998510|gb|CD662109.1|CD662109
EST:     AGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: AGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|20802704|gb|BQ293754.1|BQ293754
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGG
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGG
EST: gi|211110877|gb|FL478099.1|FL478099
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|149086938|gb|EE176480.2|EE176480
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|30087963|gb|CB886168.1|CB886168
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGT
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGT
EST: gi|78087119|gb|DV515512.1|DV515512
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|67015444|gb|CO444193.1|CO444193
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|148977668|gb|EE026094.2|EE026094
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|148963040|gb|EE013991.2|EE013991
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|31350209|gb|CD434566.1|CD434566
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATTCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|148931470|gb|EC874468.2|EC874468
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|50322405|gb|CO517531.1|CO517531
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|149096347|gb|EE182072.2|EE182072
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|149069994|gb|EE158394.2|EE158394
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|32925472|gb|CF030284.1|CF030284
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATTCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|31354660|gb|CD439017.1|CD439017
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATTCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|32926481|gb|CF031293.1|CF031293
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATTCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|149077783|gb|EE166504.2|EE166504
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCAGGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|211523599|gb|FL477918.1|FL477918
EST:     ACTTCAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|31348834|gb|CD433191.1|CD433191
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATTCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|149069952|gb|EE158352.2|EE158352
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|32925514|gb|CF030326.1|CF030326
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATTCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|31358221|gb|CD442578.1|CD442578
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATTCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|9794698|gb|BE553006.1|BE553006
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|32926805|gb|CF031617.1|CF031617
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATTCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|60352887|gb|DN219860.1|DN219860
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|211523598|gb|FL477917.1|FL477917
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|32924876|gb|CF029688.1|CF029688
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATTCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|211390184|gb|FL169302.1|FL169302
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATTCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|149013853|gb|EE043334.2|EE043334
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|149106264|gb|EE291962.2|EE291962
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|71773401|gb|DR971305.1|DR971305
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|32925685|gb|CF030497.1|CF030497
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATTCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|71445608|gb|DR826658.1|DR826658
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|211110876|gb|FL478098.1|FL478098
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|29577180|gb|CB617292.1|CB617292
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTT
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTT
EST: gi|32925444|gb|CF030256.1|CF030256
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATAAGATTTATTCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA
EST: gi|149055287|gb|EE156221.2|EE156221
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGGGTATCATA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATA
EST: gi|31612343|gb|CD568965.1|CD568965
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGCATGGGG
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGG
EST: gi|32925655|gb|CF030467.1|CF030467
EST:     ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACA                         ATTGCTAAGGAGTATGGGGGTATCATAAGATTTATTCAGGTTTCTTGCCTA
genomic: ACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 303

GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTAGGGGCGTCACCGTCTTCTGAATCTAGAATGTTGAGGACAAAAGCTGCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 481

GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTAGGGGCGTCACCGTCTTCTGAATCTAGAATGTTGAGGACAAAAGCTGCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 395

GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTAGGGGCGTCACCGTCTTCTGAATCTAGAATGTTGAGGACAAAAGCTGCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 451

GACGAGAGTATGAAACAAGGAACTACAGCTTCGAAGAAGTAAACCACCATATGCCTGAACAGCTTGCAACAgtatgtcctg ... ttctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTAGGGGCGTCACCGTCTTCTGAATCTAGAATGTTGAGGACAAAAGCTGCAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactagacttccagtggtgcctgtttagtaactgcatgatttggattctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTAGGGGCGTCACCGTCTTCTGAATCTAGAATGTTGAGGACAAAAGCTGCAG
                         tagtaac  putative branch site (score: 451)
                       tttagtaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tattgtttatgtttcatatgtttgcaatatgagaatacaacttgtgactagacttccagtggtgcctgtttagtaactgcatgatttggattctacacagATTGCTAAGGAGCATGGGGGTATCATAAGATTTATCCAGGTTTCTTGCCTAGGGGCGTCACCGTCTTCTGAATCTAGAATGTTGAGGACAAAAGCTGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - -tgtttca
- - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - -aatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatga