1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacgatggttccattcttctaatgattttatgcttttgttcacgagtcctagggattgagcatctaaggcctcatctcttgtttgcagTGCACTGAGGAAGCTCATCGACCAGTGAACTGCGAGACTGTTTCTAAGTGGATATTAAAGAATAGTGCAGAATCTGAAAATATGAACTGGTTTGTCGCAG
species | Zea mays |
transcript | GRMZM2G143644_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGAAAACTATGATGTYTCATGCAATTGCAAGTTCAGCTTTTGCTGGAAT TGCACTGAGGAAGCTCATCGACCAGTGAACTGCGAGACTGTTTYTAAGTGGEST: gi|211233382|gb|FL465909.1|FL465909
genomic: ATGAAAACTATGATGTCTCATGCAATTGCAAGTTCAGCTTTTGCTGGAATgtacgatggt ... ttgtttgcagTGCACTGAGGAAGCTCATCGACCAGTGAACTGCGAGACTGTTTCTAAGTGG
EST: ATGAAAACTATGATGTCTCATGCAATTGCAAGTTCAGCTTTTGCTGGAAT TGCACTGAGGAAGCTCATCGACCAGTGAACTGCGAGACTGTTTCTAAGTGGEST: gi|211233381|gb|FL465908.1|FL465908
genomic: ATGAAAACTATGATGTCTCATGCAATTGCAAGTTCAGCTTTTGCTGGAATgtacgatggt ... ttgtttgcagTGCACTGAGGAAGCTCATCGACCAGTGAACTGCGAGACTGTTTCTAAGTGG
EST: ATGAAAACTATGATGTCTCATGCAATTGCAAGTTCAGCTTTTGCTGGAAT TGCACTGAGGAAGCTCATCGACCAGTGAACTGCGAGACTGTTTCTAAGTGG
genomic: ATGAAAACTATGATGTCTCATGCAATTGCAAGTTCAGCTTTTGCTGGAATgtacgatggt ... ttgtttgcagTGCACTGAGGAAGCTCATCGACCAGTGAACTGCGAGACTGTTTCTAAGTGG
ttttgttcacgagtcctagggattgagcatctaaggcctcatctcttgtttgcagTGCACTGAGGAAGCTCATCGACCAGTGAACTGCGAGACTGTTTCTAAGTGGATATTAAAGAATAGTGCAGAATCTGAAAATATGAACTGGTTTGTCGCAG
cctcatctcttgttt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgatggttccattcttctaatgattttatgcttttgttcacgagtcctagggattgagcatctaaggcctcatctcttgtttgcagTGCACTGAGGAAGCTCATCGACCAGTGAACTGCGAGACTGTTTCTAAGTGGATATTAAAGAATAGTGCAGAATCTGAAAATATGAACTGGTTTGTCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA