1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacttgctatagtccacccaacattttgcagtgcatctttccatttctactgtatgtcaacactgctgaatttaatatgatgcagGTCACTATTGGTTCTGAAGACTTGAAGGCTAATCATGCCATTGTTCAGCATGTAGAGATATTATCTGAGAGTCAGAAGTATAACAA
species | Zea mays |
transcript | GRMZM2G143246_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGAAGGAAGTTGAGCAGCTAGCAAGGAATTTCCTTTTTGACCCATACAAG GTCACTATTGGTTCTGAAGACTTGAAGGCTAATCATGCCATTGTTCAGCATEST: gi|60342571|gb|DN209544.1|DN209544
genomic: CGAAGGAAGTTGAGCAGCTAGCAAGGAATTTCCTTTTTGACCCATACAAGgtacttgcta ... tatgatgcagGTCACTATTGGTTCTGAAGACTTGAAGGCTAATCATGCCATTGTTCAGCAT
EST: CGAAGGAAGTTGAGCAGCTAGCAAGGAATTTCCTTTTTGACCCATACAAG GTCACTATTGGTTCTGAAGACTTGAAGGCTAATCATGCCATTGTTCAGCATEST: gi|31349821|gb|CD434178.1|CD434178
genomic: CGAAGGAAGTTGAGCAGCTAGCAAGGAATTTCCTTTTTGACCCATACAAGgtacttgcta ... tatgatgcagGTCACTATTGGTTCTGAAGACTTGAAGGCTAATCATGCCATTGTTCAGCAT
EST: CGAAGGAAGTTGAGCAGCTAGCAAGGAATTTCCTTTTTGACCCATACAAG GTCACTATTGGTTCTGAAGACTTGAAGGCTAATCATGCCATTGTTCAGCATEST: gi|76287086|gb|DV026654.1|DV026654
genomic: CGAAGGAAGTTGAGCAGCTAGCAAGGAATTTCCTTTTTGACCCATACAAGgtacttgcta ... tatgatgcagGTCACTATTGGTTCTGAAGACTTGAAGGCTAATCATGCCATTGTTCAGCAT
EST: GAAGGGAAGTTGAGCAGCTAGCAAGGAATTTCCTTTTTGACCCATACAAG GTCACTATTGGTTCTGAAGACTTGAAGGCTAATCATGCCATTGTTCAGCATEST: gi|211150648|gb|FL192881.1|FL192881
genomic: GAA-GGAAGTTGAGCAGCTAGCAAGGAATTTCCTTTTTGACCCATACAAGgtacttgcta ... tatgatgcagGTCACTATTGGTTCTGAAGACTTGAAGGCTAATCATGCCATTGTTCAGCAT
EST: CGAAG-AAGTTGAGCAGCTAGCAAGGAATTTCCTTTTTGACCCATACAAG GTCACTATTGGTTCTGAAGACTTGAAGGCTAATCATGCCATTGTTCAGCATEST: gi|9732984|gb|BE511736.1|BE511736
genomic: CGAAGGAAGTTGAGCAGCTAGCAAGGAATTTCCTTTTTGACCCATACAAGgtacttgcta ... tatgatgcagGTCACTATTGGTTCTGAAGACTTGAAGGCTAATCATGCCATTGTTCAGCAT
EST: CGAAGGAAGTTGAGCAGCTAGCAAGGAATTTCCTTTTTGACCCATACAAG GTCACTATTGGTTCTGAAGACTTGAAGGCTAATCATGCC
genomic: CGAAGGAAGTTGAGCAGCTAGCAAGGAATTTCCTTTTTGACCCATACAAGgtacttgcta ... tatgatgcagGTCACTATTGGTTCTGAAGACTTGAAGGCTAATCATGCC
gtgcatctttccatttctactgtatgtcaacactgctgaatttaatatgatgcagGTCACTATTGGTTCTGAAGACTTGAAGGCTAATCATGCCATTGTTCAGCATGTAGAGATATTATCTGAGAGTCAGAAGTATAACAA
atttaat putative branch site (score: 110)
tgaatttaatatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgctatagtccacccaacattttgcagtgcatctttccatttctactgtatgtcaacactgctgaatttaatatgatgcagGTCACTATTGGTTCTGAAGACTTGAAGGCTAATCATGCCATTGTTCAGCATGTAGAGATATTATCTGAGAGTCAGAAGTATAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT