1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgcttatactgatatatatgcagtaataaacatgagacattaaacaaatgactgtttggcccagtatctaaatcttgtcaccttcccattatttttcagGTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAGCTGGACCCTCAACTTGAAGCTCTTGTTGGAAG
species | Zea mays |
transcript | GRMZM2G141903_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAG GTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAGEST: gi|18964717|gb|BM661166.1|BM661166
genomic: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAGgtaagcgtta ... tatttttcagGTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAG
EST: CATTCTTTTATGGCCATGACAACCATGACCAACNTGTGAAGATTGCAAAG GTCCTNGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAGEST: gi|78027572|gb|DV495959.1|DV495959
genomic: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAGgtaagcgtta ... tatttttcagGTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAG
EST: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAG GTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAGEST: gi|76925598|gb|DV170499.1|DV170499
genomic: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAGgtaagcgtta ... tatttttcagGTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAG
EST: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAG GTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAGEST: gi|60353291|gb|DN220264.1|DN220264
genomic: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAGgtaagcgtta ... tatttttcagGTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAG
EST: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAG GTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAGEST: gi|60400467|gb|DN233274.1|DN233274
genomic: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAGgtaagcgtta ... tatttttcagGTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAG
EST: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAG GTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAGEST: gi|5895649|gb|AW036895.1|AW036895
genomic: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAGgtaagcgtta ... tatttttcagGTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAG
EST: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAG GTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAGEST: gi|60344732|gb|DN211705.1|DN211705
genomic: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAGgtaagcgtta ... tatttttcagGTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAG
EST: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAG GTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAGEST: gi|24769466|gb|CA404595.1|CA404595
genomic: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAGgtaagcgtta ... tatttttcagGTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAG
EST: TTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAG GTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAGEST: gi|60394565|gb|DN227435.1|DN227435
genomic: TTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAGgtaagcgtta ... tatttttcagGTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAG
EST: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAG GTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAGEST: gi|5819188|gb|AI987394.1|AI987394
genomic: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAGgtaagcgtta ... tatttttcagGTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAG
EST: TTGTGAAGATTGCAAAG GTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAGEST: gi|19351815|gb|BM896347.1|BM896347
genomic: TTGTGAAGATTGCAAAGgtaagcgtta ... tatttttcagGTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAG
EST: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAG GTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACEST: gi|78021390|gb|DV489777.1|DV489777
genomic: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAGgtaagcgtta ... tatttttcagGTCCTTGGAACAGATGGGCTGAATTCTTATTTGAAC
EST: TGACAACCATGACCAACTTGTGAAGATTGCAAAG GTCCTTGGAACAGATGGGCTGAATTCTTATTNGAACAAGTACCACATTGAGEST: gi|32849417|gb|CD989098.1|CD989098
genomic: TGACAACCATGACCAACTTGTGAAGATTGCAAAGgtaagcgtta ... tatttttcagGTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAG
EST: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAG GTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTAEST: gi|60399542|gb|DN232353.1|DN232353
genomic: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAGgtaagcgtta ... tatttttcagGTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTA
EST: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAG GTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAG
genomic: CATTCTTTTATGGCCATGACAACCATGACCAACTTGTGAAGATTGCAAAGgtaagcgtta ... tatttttcagGTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAG
caaatgactgtttggcccagtatctaaatcttgtcaccttcccattatttttcagGTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAGCTGGACCCTCAACTTGAAGCTCTTGTTGGAAG
atctaaa putative branch site (score: 3)
ccttcccattattttt putative PPT
attatttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcttatactgatatatatgcagtaataaacatgagacattaaacaaatgactgtttggcccagtatctaaatcttgtcaccttcccattatttttcagGTCCTTGGAACAGATGGGCTGAATTCTTATTTGAACAAGTACCACATTGAGCTGGACCCTCAACTTGAAGCTCTTGTTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG