1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...attatcttcagtaaatataaaaaagtgggaaatgggaattgtaccactatgctgtgtactatgttcctatctaattccttgctttgttcttcaataacagAGAAGACATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATATTGTGCGCCTTCAG
species | Zea mays |
transcript | GRMZM2G141873_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGGATTGTAGGGTTAAGTGTCTCGCGGATGGTGGTTTTTTCCTTGATGT AGAAGACCATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATGTTGEST: gi|32838810|gb|CD978491.1|CD978491
genomic: AAGGATTCTAGGGTTAAGTGTCTCGCGGATGGTGGTTTTTTCCTTGATGTgtatgtctct ... tcaataacagAGAAGA-CATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATATTG
EST: AAGGATTCTAGGGTTAAGTGTCTCGCGGATGGTGGTTTTTTCCTTGATGT AGAAGACCATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATGTTGEST: gi|32836882|gb|CD976560.1|CD976560
genomic: AAGGATTCTAGGGTTAAGTGTCTCGCGGATGGTGGTTTTTTCCTTGATGTgtatgtctct ... tcaataacagAGAAGAC-ATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATATTG
EST: AAGGATTCTAGGGTTAAGTGTCTCGCGGATGGTGGTTTTTTCCTTGATGT AGAAGACATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATGTTGTEST: gi|149011848|gb|EE042455.2|EE042455
genomic: AAGGATTCTAGGGTTAAGTGTCTCGCGGATGGTGGTTTTTTCCTTGATGTgtatgtctct ... tcaataacagAGAAGACATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATATTGT
EST: AAGGATTCTAGGGTTAAGTGTCTCGCGGATGGTGGTTTTTTCCTTGATGT AGAAGACATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATATTGTEST: gi|32836611|gb|CD976289.1|CD976289
genomic: AAGGATTCTAGGGTTAAGTGTCTCGCGGATGGTGGTTTTTTCCTTGATGTgtatgtctct ... tcaataacagAGAAGACATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATATTGT
EST: AAGGATTCTAGGGTTAAGTGTCTCGCGGATGGTGGTTTTTTCCTTGATGT AGAAGACATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATGTTGTEST: gi|71418000|gb|DR804278.1|DR804278
genomic: AAGGATTCTAGGGTTAAGTGTCTCGCGGATGGTGGTTTTTTCCTTGATGTgtatgtctct ... tcaataacagAGAAGACATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATATTGT
EST: AAGGATTCTAGGGTTAAGTGTCTCGCGGATGGTGGTTTTTTCCTTGATGT AGAAGACATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATATTGTEST: gi|71417999|gb|DR804277.1|DR804277
genomic: AAGGATTCTAGGGTTAAGTGTCTCGCGGATGGTGGTTTTTTCCTTGATGTgtatgtctct ... tcaataacagAGAAGACATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATATTGT
EST: AGGGTTAAGTGTCTCGCGGATGGTGGTTTTTTCCTTGATGT AGAAGACATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATATTGTEST: gi|78087078|gb|DV515471.1|DV515471
genomic: AGGGTTAAGTGTCTCGCGGATGGTGGTTTTTTCCTTGATGTgtatgtctct ... tcaataacagAGAAGACATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATATTGT
EST: AAGGATTCTAGGGTTAAGTGTCTCGCGGATGGTGGTTTTTTCCTTGATGT AGAAGACATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATATTGT
genomic: AAGGATTCTAGGGTTAAGTGTCTCGCGGATGGTGGTTTTTTCCTTGATGTgtatgtctct ... tcaataacagAGAAGACATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATATTGT
actatgctgtgtactatgttcctatctaattccttgctttgttcttcaataacagAGAAGACATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATATTGTGCGCCTTCAG
atctaat putative branch site (score: 3)
ttccttgctttgttct CT-rich tract
tatctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attatcttcagtaaatataaaaaagtgggaaatgggaattgtaccactatgctgtgtactatgttcctatctaattccttgctttgttcttcaataacagAGAAGACATTTCTGGGAGGAGGACAATGCACTCTTTCTACAGTGATATTGTGCGCCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA