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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgattttcacctagtttcatggagtatgaaaaccatattatattttttaagaatatccttaacatatctaacatctttgtcatgttgttgtatcagaaccttatgcttcatttttaacatttatccttttttctcaaatcagGAGCTTATGCTTCCTTTTGCAATAGTGGCTGAAAATTTCAAGAAACTGCAACGCTGGGAAAATCCACGTTCAACATTTTGTTTTCTACTATTGGTTCATA

Basic information

species Zea mays
transcript GRMZM2G141185_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141185_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g64870.1 (Oryza sativa), 3'ss of exon 8
gtatttgattttcacctagtttcatggagtatgaaaaccatattatattttttaagaatatccttaac-atatctaacatctttgtcatgttgttgtatcagaaccttatgcttcatttttaacatttatc-cttttttctcaaatcagGAGCTTATGCTTCCTTTTGCAATAGTGGCTGAAAATTTCAAGAAACTGCAACGCTGGGAAAATCCACGTTCAACATTTTGTTTTCTACTATTGGTTCATA
                                                |  |  | || || |  |   || |  |      |||  |   | |||| ||  |  |    | ||||| ||||  || |||| ||| ||||   |||||||||||||| ||||||||||||||||||  |||||| ||| | || ||  |||||||||||||| | ||| ||||   ||||||||||||  ||||| |||
------------------------------------------------tggtagaaaaaataccgatttattttcagttgagttggaaatctcttgt-tcttaggcagggggttcatgtttataatgtatctcttgtttcatgaatcagGAGCTTATACTTCCTTTTGCAATAGTGAGTGAAAAATTCTACAAGCTCAAACGCTGGGAAAATTCTCGTACAACCGCTTGTTTTCTACTTGTGGTTTATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211341089|gb|FL157206.1|FL157206
EST:     TAGTTGCTGCTACAATCGAAGGTATTCCAAGTAACATTGACCTCTTCAAG                         GAGCTTATGCTTCCTTTTGCAATAGTGGCTGAAAATTTCAAGAAACTGCAA
genomic: TAGTTGCTGCTACAATCGAAGGTATTCCAAGTAACATTGACCTCTTCAAGgtatttgatt ... ctcaaatcagGAGCTTATGCTTCCTTTTGCAATAGTGGCTGAAAATTTCAAGAAACTGCAA
EST: gi|211341088|gb|FL157205.1|FL157205
EST:     TAGTTGCTGCTACAATCGAAGGTATTCCAAGTAACATTGACCTCTTCAAG                         GAGCTTATGCTTCCTTTTGCAATAGTGGCTGAAAATTTCAAGAAACTGCAA
genomic: TAGTTGCTGCTACAATCGAAGGTATTCCAAGTAACATTGACCTCTTCAAGgtatttgatt ... ctcaaatcagGAGCTTATGCTTCCTTTTGCAATAGTGGCTGAAAATTTCAAGAAACTGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtatcagaaccttatgcttcatttttaacatttatccttttttctcaaatcagGAGCTTATGCTTCCTTTTGCAATAGTGGCTGAAAATTTCAAGAAACTGCAACGCTGGGAAAATCCACGTTCAACATTTTGTTTTCTACTATTGGTTCATA
                        ttttaac  putative branch site (score: 2)
                              catttatccttttttc  CT-rich tract
                      atttttaacatttatc  TA-rich tract