1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaaataaaagctttaatattcatgtctaaagattagttatattattccgatgtagattaatggttcccttttctctctctctcccacagGATCCTTGTTTATTGGGCTCTTTAGAGGACGGTCTGAATGCACTTCTGAATATTGAA
species | Zea mays |
transcript | GRMZM2G140156_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGAAGAAATCAACATGAAGTTACTTCTATGTGGAGTGTCATGCACCTTG NATCCTTGTTTATEST: gi|78091295|gb|DV519669.1|DV519669
genomic: ATGAAGAAATCAACATGAAGTTACTTCTATGTGGAGTGTCATGCACCTTGgtaaataaaa ... tctcccacagGATCCTTGTTTAT
EST: ATGAAGAAATCAACATGAAGTTACTTCTATGTGGAGTGTCATGCACCTTG GATCCTTGTTTATEST: gi|67019595|gb|CO448344.1|CO448344
genomic: ATGAAGAAATCAACATGAAGTTACTTCTATGTGGAGTGTCATGCACCTTGgtaaataaaa ... tctcccacagGATCCTTGTTTAT
EST: ATGAAGAAATCAACATGAAGTTACTTCTATGTGGAGTGTCATGCACCTTG GATCCTTGTTTATTGGGCTCTTTAGAGGACGGTCTGAATGCACTTCTGAAT
genomic: ATGAAGAAATCAACATGAAGTTACTTCTATGTGGAGTGTCATGCACCTTGgtaaataaaa ... tctcccacagGATCCTTGTTTATTGGGCTCTTTAGAGGACGGTCTGAATGCACTTCTGAAT
agttatattattccgatgtagattaatggttcccttttctctctctctcccacagGATCCTTGTTTATTGGGCTCTTTAGAGGACGGTCTGAATGCACTTCTGAATATTGAA
gattaat putative branch site (score: 280)
ttaatggttccctttt CT-rich tract
tagattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaataaaagctttaatattcatgtctaaagattagttatattattccgatgtagattaatggttcccttttctctctctctcccacagGATCCTTGTTTATTGGGCTCTTTAGAGGACGGTCTGAATGCACTTCTGAATATTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA