1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaaatggcacagtttactttgtatcctttagcttcatgatcaatttgatttggtctaatgtcctacatgcctttgttcagGCAAATCCATCTGAACACAATGATTCGAATTGGTGGTGTTGTTACCCGACGATCTGGTGTATTCCCTCAGCTGCAGCAGGTGAAGTATGACTGTAACAAA
species | Zea mays |
transcript | GRMZM2G139894_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATGTTCGAATATCGAACCTTCCTGTCTATGATCAAATACGCAATATCAG GCAAATCCATCTGAACACAATGATTCGAATTGGTGGTGTTGTTACCCGACGEST: gi|22936028|gb|BU572303.1|BU572303
genomic: TATGTTCGAATATCGAACCTTCCTGTCTATGATCAAATACGCAATATCAGgtaaatggca ... ctttgttcagGCAAATCCATCTGAACACAATGATTCGAATTGGTGGTGTTGTTACCCGACG
EST: TATGTTCGAATATCGAACCTTCCTGTCTATGATCAAATACGCAATATCAG GCAAATCCATCTGAACACAATGATTCGAATTGGTGGTGTTGTTACCCGACGEST: gi|21432118|gb|BQ547608.1|BQ547608
genomic: TATGTTCGAATATCGAACCTTCCTGTCTATGATCAAATACGCAATATCAGgtaaatggca ... ctttgttcagGCAAATCCATCTGAACACAATGATTCGAATTGGTGGTGTTGTTACCCGACG
EST: TATGTTCGAATATCGAACCTTCCTGTCTATGATCAAATACGCAATATCAG GCAAATCCATCTGAACACAATGATTCGAATTGGTGGTGTTGTTACCCGACG
genomic: TATGTTCGAATATCGAACCTTCCTGTCTATGATCAAATACGCAATATCAGgtaaatggca ... ctttgttcagGCAAATCCATCTGAACACAATGATTCGAATTGGTGGTGTTGTTACCCGACG
ctttagcttcatgatcaatttgatttggtctaatgtcctacatgcctttgttcagGCAAATCCATCTGAACACAATGATTCGAATTGGTGGTGTTGTTACCCGACGATCTGGTGTATTCCCTCAGCTGCAGCAGGTGAAGTATGACTGTAACAAA
gtctaat putative branch site (score: 17)
cctttgttc putative PPT
aatttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatggcacagtttactttgtatcctttagcttcatgatcaatttgatttggtctaatgtcctacatgcctttgttcagGCAAATCCATCTGAACACAATGATTCGAATTGGTGGTGTTGTTACCCGACGATCTGGTGTATTCCCTCAGCTGCAGCAGGTGAAGTATGACTGTAACAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG