1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatttttttaaccatctcctttcactctggtccaatgctacgttgttctatttcataaatgcaaaattgatttccatatataatttgaaattacacagGCGTACCAAACGTTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTCTGAAAGAACTGCAAGGGAACATAGGCAACCGTGGGCTTTTTGGCTGAACT
species | Zea mays |
transcript | GRMZM2G139038_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAATCAAAAGACTTCATGCCAACATTTCCTGCTCTTAATGAACTTGACAG GCGTACCAAACGTTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTCTEST: gi|5608154|gb|AI901821.1|AI901821
genomic: AAATCAAAAGACTTCATGCCAACATTTCCTGCTCTTAATGAACTTGACAGgtattttttt ... aattacacagGCGTACCAAACGTTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTCT
EST: TCAAAAG-CTTCATGCCAACATTTCCTGCTCTTAATGAACTTGCCAG GCGTACCAAACGTTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTCTEST: gi|13388885|gb|BG462452.1|BG462452
genomic: TCAAAAGACTTCATGCCAACATTTCCTGCTCTTAATGAACTTGACAGgtattttttt ... aattacacagGCGTACCAAACGTTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTCT
EST: AAATCAAAAGACTTCATGCCAACATTTCCTGCTCTTAATGAACTTGACAG GCGTACCAAACGTTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTCT
genomic: AAATCAAAAGACTTCATGCCAACATTTCCTGCTCTTAATGAACTTGACAGgtattttttt ... aattacacagGCGTACCAAACGTTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTCT
tgttctatttcataaatgcaaaattgatttccatatataatttgaaattacacagGCGTACCAAACGTTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTCTGAAAGAACTGCAAGGGAACATAGGCAACCGTGGGCTTTTTGGCTGAACT
aattgat putative branch site (score: 4)
aaaattgatttccata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttttttaaccatctcctttcactctggtccaatgctacgttgttctatttcataaatgcaaaattgatttccatatataatttgaaattacacagGCGTACCAAACGTTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTCTGAAAGAACTGCAAGGGAACATAGGCAACCGTGGGCTTTTTGGCTGAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC