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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggtagctactgtttagctacttgaccttttctttacctcgggaatagcagattacatatttatgatgagtgatgctttttgctaatacttctactgtagGTTAACCCACATACACACCAACTCAAAATTTGCGATTTCGGAAGTGCTAAAGTATTG

Basic information

species Zea mays
transcript GRMZM2G138676_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G138676_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g62500.1 (Oryza sativa), 3'ss of exon 6
-----aggtagctactgtttagctacttgaccttttctttacctcgggaatagcagattacatatttatgatgagtgatgctttttgctaatacttc-tactgtagGTTAACCCACATACACACCAACTCAAAATTTGCGATTTCGGAAGTGCTAAAGTATTG
     |  ||  || | |  | |    ||| | |   | ||| |   || |   |  | ||  | || ||||| ||  |  |     ||  | ||||  ||||||||||||||||||||||||||| |||||||| || ||||| || ||||| ||||| |||
acttcaattatttattttaaaaccg--tgatcatgcatgtacttacagactga-aattcactaagttttgatg-gtactaataaggtct--tccttcgcactgtagGTTAACCCACATACACACCAGCTCAAAATATGTGATTTTGGCAGTGCAAAAGTTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32931035|gb|CF035847.1|CF035847
EST:     ATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTT                         GTTAACCCACATACACACCAACTCAAAATTTGCGATTTCGGAAGTGCTAAA
genomic: ATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTTgtgagatatg ... tctactgtagGTTAACCCACATACACACCAACTCAAAATTTGCGATTTCGGAAGTGCTAAA
EST: gi|211037863|gb|FK972663.1|FK972663
EST:     ATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTT                         GTTAACCCACATACACACCAACTCAAAATTTGCGATTTCGGAAGTGCTAAA
genomic: ATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTTgtgagatatg ... tctactgtagGTTAACCCACATACACACCAACTCAAAATTTGCGATTTCGGAAGTGCTAAA
EST: gi|6095487|gb|AW120154.1|AW120154
EST:     ATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTT                         GTTAACCCACATACACACCAACTCAAAATTTGCGATTTCGGAAGTGCTAAA
genomic: ATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTTgtgagatatg ... tctactgtagGTTAACCCACATACACACCAACTCAAAATTTGCGATTTCGGAAGTGCTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcagattacatatttatgatgagtgatgctttttgctaatacttctactgtagGTTAACCCACATACACACCAACTCAAAATTTGCGATTTCGGAAGTGCTAAAGTATTG
                                   tgctaat  putative branch site (score: 2)
                                           cttctact  CT-rich tract
      attacatatttatgat  TA-rich tract