1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acatttctgcaataccattggatcttatgcatgaggtagtgtgttggttgcaaacttgcactgcttgttttattgattatggtacattgtcccctttcagAGATTTTACAGTTACCTTGATCTCAAGTCAAAGCAGCCAGATGCAAATGTCCCACCGCTTGAAAGATCTCTAAGGAGGATAACCGAACCTGATCCTGATG
species | Zea mays |
transcript | GRMZM2G137968_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGGAAGAGAGGTCCTCAAGCCTGAGTTTACGCCAAATCCCATCTTGGAG AGATTTTACAGTTACCTTGATCTCAAGTCAAAGCAGCCAGATGCAAATGTCEST: gi|32934920|gb|CF039732.1|CF039732
genomic: CTGGAAGAGAGGTCCTCAAGCCTGAGTTTACGCCAAATCCCATCTTGGAGgtactatttt ... cccctttcagAGATTTTACAGTTACCTTGATCTCAAGTCAAAGCAGCCAGATGCAAATGTC
EST: CTGGAAGAGAGGTCCTCAAGCCTGAGTTTACGCCAAATCCCATCTTGGAG AGATTTTACAGTTACCTTGATCTCAAGTCAAAGCAGCCAGATGCAAATGTCEST: gi|32944529|gb|CF049348.1|CF049348
genomic: CTGGAAGAGAGGTCCTCAAGCCTGAGTTTACGCCAAATCCCATCTTGGAGgtactatttt ... cccctttcagAGATTTTACAGTTACCTTGATCTCAAGTCAAAGCAGCCAGATGCAAATGTC
EST: CTGGAAGAGAGGTCCTCAAGCCTGAGTTTACGCCAAATCCCATCTTGGAG AGATTTTACAGTTACCTTGAT
genomic: CTGGAAGAGAGGTCCTCAAGCCTGAGTTTACGCCAAATCCCATCTTGGAGgtactatttt ... cccctttcagAGATTTTACAGTTACCTTGAT
ggttgcaaacttgcactgcttgttttattgattatggtacattgtcccctttcagAGATTTTACAGTTACCTTGATCTCAAGTCAAAGCAGCCAGATGCAAATGTCCCACCGCTTGAAAGATCTCTAAGGAGGATAACCGAACCTGATCCTGATG
tattgat putative branch site (score: 3)
cattgtcccctttc putative PPT
ttgttttattgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatttctgcaataccattggatcttatgcatgaggtagtgtgttggttgcaaacttgcactgcttgttttattgattatggtacattgtcccctttcagAGATTTTACAGTTACCTTGATCTCAAGTCAAAGCAGCCAGATGCAAATGTCCCACCGCTTGAAAGATCTCTAAGGAGGATAACCGAACCTGATCCTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - ttctgca
- - - - - - - - - - - - - -tgcatga
- - - - - - - - - - - - - - - - - - - - - - tggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - cttgcac