1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taccatgccatccttattatggatgttatatgtgttccctttttaccgctttaggcaaaattgaagcttgctctgatgatctttttgtttctgataccagGTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGTGACAGGACAATACAAAAGAAG
species | Zea mays |
transcript | GRMZM2G137615_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAG GTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGTEST: gi|211198162|gb|FL344190.1|FL344190
genomic: AGGCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAGgtaaatggtc ... ctgataccagGTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGT
EST: AGGCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAG GTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGTEST: gi|5791229|gb|AI978021.1|AI978021
genomic: AGGCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAGgtaaatggtc ... ctgataccagGTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGT
EST: AGGCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAG GTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGTEST: gi|211313757|gb|FL309500.1|FL309500
genomic: AGGCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAGgtaaatggtc ... ctgataccagGTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGT
EST: AGGCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAG GTTCTTGCCATGCTACATGAAGCTEST: gi|60337159|gb|DN204132.1|DN204132
genomic: AGGCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAGgtaaatggtc ... ctgataccagGTTCTTGCCATGCTACATGAAGCT
EST: AGGCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAG GTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGTEST: gi|26559875|gb|CA832110.1|CA832110
genomic: AGGCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAGgtaaatggtc ... ctgataccagGTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGT
EST: AGGCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAG GTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGTEST: gi|211513903|gb|FL285080.1|FL285080
genomic: AGGCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAGgtaaatggtc ... ctgataccagGTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGT
EST: AGGCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAG GTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGTEST: gi|87156412|gb|DY401201.1|DY401201
genomic: AGGCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAGgtaaatggtc ... ctgataccagGTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGT
EST: AGGCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAG GTTCTTGCCATGCTACATGAAEST: gi|30052636|gb|AI065926.2|AI065926
genomic: AGGCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAGgtaaatggtc ... ctgataccagGTTCTTGCCATGCTACATGAA
EST: AGGCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAG GTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGTEST: gi|71770369|gb|DR968306.1|DR968306
genomic: AGGCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAGgtaaatggtc ... ctgataccagGTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGT
EST: GCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAG GTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGT
genomic: GCCATTGTTTGTTCAGTATCTTCTGGTTCAGTGGAATATGCGAAACAGgtaaatggtc ... ctgataccagGTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGT
ccgctttaggcaaaattgaagcttgctctgatgatctttttgtttctgataccagGTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGTGACAGGACAATACAAAAGAAG
ttctgat putative branch site (score: 82)
tctttttgtttct CT-rich tract
aaaattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taccatgccatccttattatggatgttatatgtgttccctttttaccgctttaggcaaaattgaagcttgctctgatgatctttttgtttctgataccagGTTCTTGCCATGCTACATGAAGCTGATTTCCATGTTGATATTGATGTGAGTGACAGGACAATACAAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- ccatgcc
- - - - - - - - - atggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatga