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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagaagacttgtgcattttgtttatctggttgaaggaaggaaatcatccacattgcacttataacaccgaataatcttcagGTATTGCTTAAATGGTTCGCTCAATTGGTGTTGGCTGTAGATTACTTGCACTCGAACTATGTCTTGCACCGTGATCTGAAA

Basic information

species Zea mays
transcript GRMZM2G137118_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G137118_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os05g36960.1 (Oryza sativa), 3'ss of exon 5
gtatgagaagacttgtgcattttgtttatctggttgaaggaaggaaatcatccacat-tgcacttataacaccgaataatcttcagGTATTGCTTAAATGGTTCGCTCAATTGGTGTTGGCTGTAGATTACTTGCACTCGAACTATGTCTTGCACCGTGATCTGAAA
|||||  | ||||| |   ||||   | || |  |||||| |  ||  |||||| || ||  || |||| || | ||  |  ||||  |||||| |||||||| |||||| |||| || || || || || ||||| ||||||||||||||||| || || ||||| 
gtatggaatgacttctttgtttt---tgtcagaatgaagggaaaaaggcatccaaatatgtgctaataatactgcatgtttctcagAAATTGCTGAAATGGTTTGCTCAACTGGTATTAGCCGTGGACTATTTGCATTCGAACTATGTCTTGCATCGGGACCTGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttgaaggaaggaaatcatccacattgcacttataacaccgaataatcttcagGTATTGCTTAAATGGTTCGCTCAATTGGTGTTGGCTGTAGATTACTTGCACTCGAACTATGTCTTGCACCGTGATCTGAAA
                                ttataac  putative branch site (score: 2)
                                                tcttc  putative PPT
                                           aataatctt  TA-rich tract