1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgctttcatcaaactctgcatgtttatctaagatgggaagtgatgtttgtgaatgctgtgacatttatcagaattctactttttgcagAATATAGTATTATCTGGTGGATCTACCATGTTTAAAGACTTCCACAAGAGACTCCAAACTGATATAAAGAAGATAGTGGATGACCGTGTTGCTGCGACTA
species | Zea mays |
transcript | GRMZM2G136662_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAACTGTGTTCAGTCTGCACCAATTGACACAAGGAGAGCTCTGTACAAG AATATAGTATTATCTGGTGGATCTACCATGTTTAAAGACTTCCACAAGAGAEST: gi|5932669|gb|AW057030.1|AW057030
genomic: ACAACTGTGTTCAGTCTGCACCAATTGACACAAGGAGAGCTCTGTACAAGgtgctttcat ... ctttttgcagAATATAGTATTATCTGGTGGATCTACCATGTTTAAAGACTTCCACAAGAGA
EST: ACAACTGTGTTCAGTCTGCACCAATTGACACAAGGAGAGCTCTGTACAAG AATATAGTATTATCTGGTGGATCTACCATGTTTAAAGACTTCCACAAGAGAEST: gi|6194835|gb|AW146939.1|AW146939
genomic: ACAACTGTGTTCAGTCTGCACCAATTGACACAAGGAGAGCTCTGTACAAGgtgctttcat ... ctttttgcagAATATAGTATTATCTGGTGGATCTACCATGTTTAAAGACTTCCACAAGAGA
EST: ACAACTGTGTTCAGTCTGCACCAATTGACACAAGGAGAGCTCTGTACAAG AATATAGTATTATCTGGTGGATCTACCATGTTTAAAGACTTCCACAAGAGA
genomic: ACAACTGTGTTCAGTCTGCACCAATTGACACAAGGAGAGCTCTGTACAAGgtgctttcat ... ctttttgcagAATATAGTATTATCTGGTGGATCTACCATGTTTAAAGACTTCCACAAGAGA
tgggaagtgatgtttgtgaatgctgtgacatttatcagaattctactttttgcagAATATAGTATTATCTGGTGGATCTACCATGTTTAAAGACTTCCACAAGAGACTCCAAACTGATATAAAGAAGATAGTGGATGACCGTGTTGCTGCGACTA
ttctacttttt CT-rich tract
acatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctttcatcaaactctgcatgtttatctaagatgggaagtgatgtttgtgaatgctgtgacatttatcagaattctactttttgcagAATATAGTATTATCTGGTGGATCTACCATGTTTAAAGACTTCCACAAGAGACTCCAAACTGATATAAAGAAGATAGTGGATGACCGTGTTGCTGCGACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC