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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgtggttatataacctagcccccatctcgcagatgataagtagagcttttagttttcggaagcttcttgatggtaataaacaagttgacgctctgttgcaccattgctttttgattccattctgcatttctgcaatgcagGTACCTTTTTTCTCTGAGATGGATAACCAACTTCTCGATGCCATCTGTGAGCGGCTGGTGTCTTTCCTGTGCCCTGAGAACACGTACATCTCTCGCGAGG

Basic information

species Zea mays
transcript GRMZM2G135651_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135651_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os09g38580.5 (Oryza sativa), 3'ss of exon 6
gtaagttgtggttatataacctagcccccatctcgcagatgataagtagagc-ttttagttttcggaagcttcttgatggtaataaacaagttgacgctctgttg------------------------------caccattgctttttgat------------tccattctgcatttctgcaatgcagGTACCTTTTTTCTCTGAGATGGATAACCAACTTCTCGATGCCATCTGTGAGCGGCTGGTGTCTTTCCTGTGCCCTGAGAACACGTACATCTCTCGCGAGG
||||||||||||||| || | ||     || ||        || ||||||   |||||||||  | ||| || | |||| |||         || |  ||||| |                              ||||| ||||  || ||            |   || | | || ||  ||||||||| || |||||||| ||||||||| |||||||||| || |||||||| ||||| ||||||||||||||||||||||||  ||| ||||| ||||| ||||
gtaagttgtggttattta-cttacatttcaactga------attagtagaatgttttagtttctgaaaggttttagatgttaaattttctagtggcattctgtcgtttggatggaaaaatcagtgacaaaagtaccaccagtgctacttcatagtctagcatgttttcttatcccttcctaaaatgcagGTCCCATTTTTCTCGGAGATGGATTACCAACTTCTAGACGCCATCTGCGAGCGTCTGGTGTCTTTCCTGTGCCCTGAGCGCACATACATTTCTCGTGAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211034152|gb|FL368632.1|FL368632
EST:     ACATTCGTCGGGATGTGCAGCGTCATCTTTGTTTGGACCTCGTTAGACGT                         GTACCTTTTTTCTCTGAGATGGATAACCAACTTCTCGATGCCATCTGTGAG
genomic: ATATTCGTCGGGATGTGCAGCGTCATCTTTGTTTGGACCTCGTTAGACGTgtaagttgtg ... tgcaatgcagGTACCTTTTTTCTCTGAGATGGATAACCAACTTCTCGATGCCATCTGTGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacgctctgttgcaccattgctttttgattccattctgcatttctgcaatgcagGTACCTTTTTTCTCTGAGATGGATAACCAACTTCTCGATGCCATCTGTGAGCGGCTGGTGTCTTTCCTGTGCCCTGAGAACACGTACATCTCTCGCGAGG
                       ttttgat  putative branch site (score: 4)
                                       catttct  putative PPT
                      tttttgatt  TA-rich tract