Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atctgcaaatgaatgacattttcccataaattcttagtaacattcagatatgatgctctagatactcctatagctcaaaggttctacctactgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG

Basic information

species Zea mays
transcript GRMZM2G135283_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135283_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 6
atctgcaaatgaatgacattttcccataaattcttagtaacattcagatatgatgctctagatactc--------ctatagctcaaaggttctacctactg---tttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG
         ||| |  |  || ||| | |||||||||| |  ||||||||| ||||||| | |||||        | || ||| |   |||| || |  ||    ||||||||||| ||||||||||| || |||  ||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
---------tgagtttc--ttccccctcaattcttagttatgttcagatataatgctcttggtactctcatcctcccatggcttagttgttcaacttcttgatggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAG

upper sequence: GRMZM2G135283_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA18G27710.1 (Glycine max), 3'ss of exon 7
---------------------------------------------------------------------atctgcaaatgaatgacattttcccataaat-tcttagtaacattcagata-----tgatgctctagat-----actcctatagctcaaaggttctacctactgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG
                                                                     || |   ||| | || | ||||    |  || ||||   ||   |    ||     ||  |   |  ||     | |    | | | ||   | || |      |  ||||||||| || || |||||||||||    ||||||||||||||||||||||| || |||||| | ||||| || ||||  ||||| || || |||
gtacttttgaagtttgaacttccaccattcatttcatcttataatcaaatctatagtgtgtatatggctatttaataattattgtcttttttattttgatatcttttcaaagattgagtagaccttggggtcattaatgaaaaattatactcgtttaatattgctgctataactacgcagACTGATACCAAAAAGATATCTGCTGTCTCAATATTTTTTGAGACAATGCCATATAGATTGAACGAAAGTACGGGATACATTGACTATGACCAG

upper sequence: GRMZM2G135283_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 6
atctgcaaatgaatgacattttcccataaattcttagtaacattcagatatgatgctctagatactcctatagc-----tcaaaggttctacctactgtt-tgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG
     |||     |  || ||     | ||||| | ||||||  |       || | ||    |     ||        || ||  ||    |||||  | |||||||||| || || ||||||||||||   || |||||||||||||||||||| ||  ||||| ||||||| || ||||  || || || || |||
----acaagctc-tatcagttgtattttaattcat-gtaacaagctctctcaattcacttagcatcttcattatctgcatctaatattgctgctactactatgcagACTGATACCAAAAAGATATCTGCAGTCTCGATATTTTTTGAGACAATGCCATATCGATTGAATGAAAGTACAGGATACATCGACTATGACCAG

upper sequence: GRMZM2G135283_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA14G36280.1 (Glycine max), 3'ss of exon 6
atctgcaaatgaatgacattttcccataaattcttagtaacattcagatatgatgctctagatactcc----tatagctcaaaggttctacctactgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG
    ||   | | |  ||  | ||| |  |    |  |||  |  ||  ||| ||  | | || ||       |    |   |   | |   |      ||||||||||||| ||||||||||| ||    || ||||| ||||| |||||||| ||||||||| |||| |||||||| |  || ||||| || |||
---agcctttcattagcaactccccttgcacctcttttaaattgtagcaatg-tgtgccatattctttgtaacaagattttgattatttgtttgtatcatgcagACTGACACCAAGAAGATATCGGCTGTATCTATATTCTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAG

upper sequence: GRMZM2G135283_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA02G38160.2 (Glycine max), 3'ss of exon 6
atctgcaaatgaatgacattttcccataaattcttagtaacattcagatatg-atgctctagatactcctatagctcaaaggtt--ctacctactgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG
     | | | | |  || || ||| |  | ||||  | |  |  ||  |||  |||  ||     |   | |  |    | ||   |   |      ||||||||||||| ||||||||||| ||    || ||||||||||| |||||||| ||||||||| |||| |||||||| |  || ||||| || |||
---aaccattcattagcaattccccttgcactcttttttaactgtagcaatgtgtgccatattctttgtaacaagtttttgattatttgtttgtgtcatgcagACTGACACCAAGAAGATATCAGCTGTATCTATATTTTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAG

upper sequence: GRMZM2G135283_T02 (Zea mays), 3'ss of exon 6
lower sequence: AT5G26780.3 (Arabidopsis thaliana), 3'ss of exon 6
----------------atctgcaaatgaatgacattttcccataaattcttagtaacattcagatatgatgctctagatactcctatagctcaaaggttctacctactgtt-tgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG
                 |||  |  |   | |  |       | | ||  |  |  |||     | ||    |     |    || |  ||||    || ||  | || || ||||||||||||| ||||| ||||| ||    || || ||||||||||||||||| |||||||||||||| | |||||| |  |||||||| || |||
gtacttgggttctagtctctctagcttggtca-gtcagtatttgactttcttttctcatctctttgtggaattgatattgtatcttttcctcatttcttttatttgctcttgtgcagACTGACACGAAGAAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATACAGATTGGATGAGAACACTGGTTACATTGATTATGACCAG

upper sequence: GRMZM2G135283_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv00s0211g00160.t01 (Vitis vinifera), 3'ss of exon 6
-atctgcaaatgaatgacattttcccataaattcttagtaacattcagatatgatgctctagatactcctatagctcaaaggttctacctactgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG-------
    | | |||   |||   | || | |   ||  | |||  |||    |    |  | |           || |       ||    |     | ||||||| ||||| ||||| |||||||||   || |||||||||||||||||||| || |||||| |||| |||||||| |  ||||| || || |||       
aggtttctaatatttgatgatctctccttg-tttgtggtattattactttgccttcttatgtgctagggagtaacctcctcatttcttcgctattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAGGTAACTT

upper sequence: GRMZM2G135283_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 6
--atctgcaaatgaatgacattttcccataaattct-tagtaacattcagatatgatgctctagatactcctatagctcaaaggttctac-ctactgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG
   |||   | |  ||||  | | |   |   |  | |  | || ||    | | |||  ||||  ||    |   |||     |||| | ||| |||  |||||| ||||| ||||| |||||||||   || |||||||||||||||||||| || |||||| |||| |||||||| |  ||||| || || |||
gtttctaatatttgatgatctctccttgtttgtggtattattactttgccttcttatgtgctagggacagtaac--ctcctcatttcttcgctattgt--gcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG

upper sequence: GRMZM2G135283_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv00s0211g00100.t01 (Vitis vinifera), 3'ss of exon 6
--atctgcaaatgaatgacattttcccataaattct-tagtaacattcagatatgatgctctagatactcctatagctcaaaggttctacctactgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG
   |||   | |  | ||  | | |   |   |  | |  | || ||    | | |||  ||||  ||    |   |   |    | | | || |||  |||||||||||| ||||| |||||||||   || |||||||||||||||||||| || |||||| |||| |||||||| |  ||||| || || |||
gtttctaatatttgaggatctctccttgtttgtggtattattactttgccttcttatgtgctagggacagtaacctcctcatttctttgc-tattgt--gcagACTGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCATATAGATTGAATGAGAGCACTGGCTACATTGACTATGACCAG

upper sequence: GRMZM2G135283_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 3'ss of exon 6
atctgcaaatgaatgacattttcccataaattctt--agtaacattcagatatgatgctctagatactcctatagctcaaaggttctacctactgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG
|| ||   |  |||  | | ||||  |   || ||    ||| |    |   | |   ||| |||  | |||    |  |   ||||    ||  ||||||||| ||||| ||||||||||||||    || |||||||||||||||||||| ||||||||||||||||  |||||||  ||||| || || |||
atttgaggaataatttcttcttcctttttttttttttgataaaagcttgtcttcagtatct-gatg-tgctagcttttcatcattcttttaacattttgcagACCGACACCAAGAAGATATCTGCTGTGTCTATATTTTTTGAGACAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21987802|gb|BQ779330.1|BQ779330
EST:     TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAG                         ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACA
genomic: TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggt ... ctgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACA
EST: gi|211349901|gb|FL349172.1|FL349172
EST:     TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAG                         ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
genomic: TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggt ... ctgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
EST: gi|148973319|gb|EE024404.2|EE024404
EST:     TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAG                         ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
genomic: TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggt ... ctgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
EST: gi|149012532|gb|EE042603.2|EE042603
EST:     TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAG                         ACTGACACTAAGAAGATATCTGCAACTTCAATANNNNNNNGAGACAATGCC
genomic: TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggt ... ctgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTT-GAGACAATGCC
EST: gi|148946029|gb|EC891328.2|EC891328
EST:     TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAG                         ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
genomic: TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggt ... ctgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
EST: gi|149048905|gb|EE048404.2|EE048404
EST:     TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAG                         ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
genomic: TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggt ... ctgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
EST: gi|148958252|gb|EC904466.2|EC904466
EST:     TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAG                         ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
genomic: TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggt ... ctgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
EST: gi|211286148|gb|FL173729.1|FL173729
EST:     TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAG                         ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACA-TGCCT
genomic: TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggt ... ctgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
EST: gi|60351519|gb|DN218492.1|DN218492
EST:     TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAG                         ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
genomic: TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggt ... ctgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
EST: gi|71299012|gb|DR785498.1|DR785498
EST:     TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAG                         ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
genomic: TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggt ... ctgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
EST: gi|148930308|gb|EE284699.2|EE284699
EST:     TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAG                         ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
genomic: TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggt ... ctgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
EST: gi|60346600|gb|DN213573.1|DN213573
EST:     TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAG                         ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
genomic: TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggt ... ctgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
EST: gi|67024112|gb|CO452861.1|CO452861
EST:     GGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAG                         ACTGACACTAAGAAGAT-TCTGCAACTTCAATATTTTTTGAGACAATGCCT
genomic: GGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggt ... ctgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
EST: gi|148969981|gb|EE020895.2|EE020895
EST:     TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAG                         ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
genomic: TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggt ... ctgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
EST: gi|149081312|gb|EE170425.2|EE170425
EST:     TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAG                         ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
genomic: TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggt ... ctgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
EST: gi|148947246|gb|EC892606.2|EC892606
EST:     TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAG                         ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
genomic: TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggt ... ctgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
EST: gi|149089957|gb|EE179246.2|EE179246
EST:     TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAG                         ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
genomic: TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggt ... ctgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
EST: gi|148945831|gb|EC891120.2|EC891120
EST:     TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAG                         ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT
genomic: TCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggt ... ctgtttgcagACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCT