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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatcttattgaatttgtattttgacttatttatattaatgtggttggcacgtgatgaattctttgcctatccctctgaacttctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACTTTGGCTTCCGCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACC

Basic information

species Zea mays
transcript GRMZM2G134770_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134770_T04 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os08g41010.4 (Oryza sativa), 3'ss of exon 6
gtatatcttattgaatttgtattttgacttatttatattaatgtggttggcacgtgatgaattctttgcctatccctctgaacttctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACTTTGGCTTCCGCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACC
|||||| || |  |||  | |||||||||  |    ||| || | |||| |   || |  ||| ||        | | ||||||| |  |  ||||||||| ||||||||||||||| | || || |||||| ||||||| |||||||  ||||| ||||||||||| |||||||||||||| ||||| |||||
gtatatattttcaaat--gaattttgactgttc---attgattttgttgtccattggtttattttt--------cttatgaactt-tattttagGAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32841271|gb|CD980952.1|CD980952
EST:     CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
genomic: CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAGgtatatctta ... tctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
EST: gi|166684106|gb|EG131653.1|EG131653
EST:     ATTCTCAGAAGAAGTCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
genomic: ATTCTCAGAAGAAGTCTGCAGgtatatctta ... tctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
EST: gi|32839908|gb|CD979589.1|CD979589
EST:     CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
genomic: CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAGgtatatctta ... tctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
EST: gi|6021134|gb|AW066062.1|AW066062
EST:     CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAG                         GAGCTGGCCGNGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
genomic: CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAGgtatatctta ... tctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
EST: gi|32841323|gb|CD981004.1|CD981004
EST:     CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
genomic: CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAGgtatatctta ... tctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
EST: gi|32835369|gb|CD975047.1|CD975047
EST:     ACCGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
genomic: A-CGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAGgtatatctta ... tctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
EST: gi|32840727|gb|CD980408.1|CD980408
EST:     CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
genomic: CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAGgtatatctta ... tctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
EST: gi|211157317|gb|FK993529.1|FK993529
EST:     CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAG                         GAGCTGGCCGAGATAATGATTGGGAGAGTCCACAAT-GCCACAACATCA
genomic: CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAGgtatatctta ... tctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCA-AATTGCCACAACATCA
EST: gi|32841497|gb|CD981178.1|CD981178
EST:     CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
genomic: CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAGgtatatctta ... tctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtggttggcacgtgatgaattctttgcctatccctctgaacttctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACTTTGGCTTCCGCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACC
                                           cttct  CT-rich tract
                    aattcttt  TA-rich tract