Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctcgttaacctgaaagcttatcacgcatgttccatcctctggaattattctgagacaactactgaccttttctctacgttctgaatttgatctcttctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATGCTAACAAAGGAATCAAGGTTGTAAAGGGCACGGTTGCTGTTGGTTTCGA

Basic information

species Zea mays
transcript GRMZM2G134708_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134708_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os08g44340.1 (Oryza sativa), 3'ss of exon 6
gtaagtctcgttaacct----------gaaagcttatcac-gcatgttccatcctctgga------attattctgagacaactactgaccttttctcta--cgttctgaatttgatc-------tcttctact---------------tctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATGCTAACAAAGGAATCAAGGTTGTAAAGGGCACGGTTGCTGTTGGTTTCGA
||||||||| |||  ||           ||   |||  ||   |  ||   |  |||| |      |       || |||| |||    | | | | ||   ||   | |||||  |       |||  || |               | |||||||||||||||||||| ||||  |||||  |||||| ||||| ||||| ||||||||||||||| |  |  ||||||| || || ||||||||||| ||
gtaagtctccttattctttgcatccagaaagatttactactataaattgtgttttctgaatactcaacagcaaggaaacaaatacctctcatctttatagttgtaacgtatttggccaatgaaatctcatattggagatgccatctgttgtagTGCCCCGTCTCTTCACTTCTGGCCTTGCTGCTTTCTACGAGGGATACTACGCTAACAAAGGAATCCATATCATAAAGGGAACCGTGGCTGTTGGTTTTGA

upper sequence: GRMZM2G134708_T01 (Zea mays), 3'ss of exon 6
lower sequence: Vv08s0007g03610.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtctcgttaacctgaaagcttatcacgcatgttccatcctctggaattattctgagacaactactgaccttttctctacgttctgaatttgatctcttctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATGCTAACAAAGGAATCAAGGTTGTAAAGGGCACGGTTGCTGTTGGTTTCGA
     | |  | ||     ||   | | |    ||  ||  |      ||  ||| ||   | || ||||   |  |   ||| ||    |  | |  || | | |||  |||||| || || |||||||||||||| |||  ||| |||||||| || |||||||| |||||||||||  || | ||||| || || || ||||| ||   
-----tattat-aatacacaaatattttattt-tgccccccctcacaaaaaaattttggttccaccactggattcatggttacctt----acct-aggtcatgttcttgcagTGCCTCGGCTTTTCACTGCTGGTATAGCTGCTTTTTATGAGGGTTATTATGCTAATAAAGGAATCAAAATTATCAAGGGAACAGTAGCAGTTGGGTTTAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32923590|gb|CF028402.1|CF028402
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|149089132|gb|EE178315.2|EE178315
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32839220|gb|CD978901.1|CD978901
EST:     TACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTACGAGGGCTACTATG
genomic: TACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|14191042|gb|BG833272.1|BG833272
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTACGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|71445023|gb|DR826073.1|DR826073
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32920310|gb|CF025122.1|CF025122
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|84980717|gb|DW531066.1|DW531066
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|71422582|gb|DR805773.1|DR805773
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32922417|gb|CF027229.1|CF027229
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|19057725|gb|BM736392.1|BM736392
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGCATTGCTCATTTCTACGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|50327427|gb|CO522553.1|CO522553
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|76931161|gb|DV172672.1|DV172672
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32836981|gb|CD976659.1|CD976659
EST:     TACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTACGAGGGCTACTATG
genomic: TACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|148931363|gb|EC874265.2|EC874265
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32923140|gb|CF027952.1|CF027952
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|44682264|gb|CK787312.1|CK787312
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32847254|gb|CD986935.1|CD986935
EST:     ACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTACGAGGGCTACTATG
genomic: ACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32923403|gb|CF028215.1|CF028215
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32922493|gb|CF027305.1|CF027305
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32922136|gb|CF026948.1|CF026948
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32921861|gb|CF026673.1|CF026673
EST:     CTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: CTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|149111140|gb|EE294635.2|EE294635
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGATGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCAT
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCAT
EST: gi|71439293|gb|DR820343.1|DR820343
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32920363|gb|CF025175.1|CF025175
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32922231|gb|CF027043.1|CF027043
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCGCTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32921955|gb|CF026767.1|CF026767
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|71298889|gb|DR785439.1|DR785439
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|94478914|gb|EB707872.1|EB707872
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32923263|gb|CF028075.1|CF028075
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32923579|gb|CF028391.1|CF028391
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|67014083|gb|CO442832.1|CO442832
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32921956|gb|CF026768.1|CF026768
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32839119|gb|CD978800.1|CD978800
EST:     ACCCCGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTACGAGGGCTACTATG
genomic: ACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32922199|gb|CF027011.1|CF027011
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32920482|gb|CF025294.1|CF025294
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|148939718|gb|EC884396.2|EC884396
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|88751027|gb|DY535168.1|DY535168
EST:     GAAAATCAACAACTTCTATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCT
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCT
EST: gi|149111386|gb|EE294890.2|EE294890
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32923589|gb|CF028401.1|CF028401
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32837202|gb|CD976880.1|CD976880
EST:     ACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTACGAGGGCTACTATG
genomic: ACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32922933|gb|CF027745.1|CF027745
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32923287|gb|CF028099.1|CF028099
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32922893|gb|CF027705.1|CF027705
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|149084652|gb|EE174137.2|EE174137
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|148941238|gb|EC886132.2|EC886132
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|148936977|gb|EC881144.2|EC881144
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32836497|gb|CD976175.1|CD976175
EST:     TACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTACGAGGGCTACTATG
genomic: TACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|148940672|gb|EC885484.2|EC885484
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32923539|gb|CF028351.1|CF028351
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|84980996|gb|DW531345.1|DW531345
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTAT
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTAT
EST: gi|32923175|gb|CF027987.1|CF027987
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|148937253|gb|EC881434.2|EC881434
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|148932994|gb|EE285869.2|EE285869
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32922583|gb|CF027395.1|CF027395
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32922169|gb|CF026981.1|CF026981
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32920371|gb|CF025183.1|CF025183
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATAAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|24934486|gb|CA452704.1|CA452704
EST:     ACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTACGAGGGCTACTATG
genomic: ACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|148934201|gb|EC878222.2|EC878222
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32923611|gb|CF028423.1|CF028423
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32922528|gb|CF027340.1|CF027340
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32920307|gb|CF025119.1|CF025119
EST:     GAAAATCAACAACTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
EST: gi|32923404|gb|CF028216.1|CF028216
EST:     GANAATCACCACCTTCGATGTGACCATGGTGTATCCTGAACCGTGGTGCA                         TGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG
genomic: GAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 66

GCTGTGATTGTTGGAGGTGGTTACATAGGGCTTGAGCTTAGCGCTGCCTTGAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATGCTAACAAAGGAATCAAGGTTGTAAAGGGCACGGTTGCTGTTGGTTTCGA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 713

GCTGTGATTGTTGGAGGTGGTTACATAGGGCTTGAGCTTAGCGCTGCCTTGAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATGCTAACAAAGGAATCAAGGTTGTAAAGGGCACGGTTGCTGTTGGTTTCGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 788

GCTGTGATTGTTGGAGGTGGTTACATAGGGCTTGAGCTTAGCGCTGCCTTGAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATGCTAACAAAGGAATCAAGGTTGTAAAGGGCACGGTTGCTGTTGGTTTCGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 212

GCTGTGATTGTTGGAGGTGGTTACATAGGGCTTGAGCTTAGCGCTGCCTTGAAAATCAACAACTTCGATGTGACCATGGTGTACCCTGAACCGTGGTGCAgtaagtctcg ... ctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATGCTAACAAAGGAATCAAGGTTGTAAAGGGCACGGTTGCTGTTGGTTTCGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagacaactactgaccttttctctacgttctgaatttgatctcttctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATGCTAACAAAGGAATCAAGGTTGTAAAGGGCACGGTTGCTGTTGGTTTCGA
                                       tctcttctacttct  CT-rich tract
                                aatttgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtctcgttaacctgaaagcttatcacgcatgttccatcctctggaattattctgagacaactactgaccttttctctacgttctgaatttgatctcttctacttctagTGCCCCGTCTCTTCACTGCTGGTATTGCTCATTTCTATGAGGGCTACTATGCTAACAAAGGAATCAAGGTTGTAAAGGGCACGGTTGCTGTTGGTTTCGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT