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gtgttgtttggttcatgaaatgtaacgtaaagggtaatgttaatggtttccattcgattactggcggtaacaagtttgaatagtccggtatcaatttttagtatggtatctgattacggttggactaaaacaaacatgatttaacgttatcacttatccattacgttacaaatatttgaaccaaacgctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTTCTTAGCCTCG
species | Zea mays |
transcript | GRMZM2G133988_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGG TTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTTEST: gi|211297290|gb|FL430291.1|FL430291
genomic: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGGgtgttgtttg ... gctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTT
EST: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGG TTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTTEST: gi|13382157|gb|BG458832.1|BG458832
genomic: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGGgtgttgtttg ... gctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTT
EST: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGG TTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTTEST: gi|211084567|gb|FL380768.1|FL380768
genomic: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGGgtgttgtttg ... gctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTT
EST: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGG TTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTTEST: gi|211445219|gb|FL371640.1|FL371640
genomic: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGGgtgttgtttg ... gctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTT
EST: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGG TTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTTEST: gi|211476197|gb|FL374877.1|FL374877
genomic: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGGgtgttgtttg ... gctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTT
EST: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGG TTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTTEST: gi|37381215|gb|CF627478.1|CF627478
genomic: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGGgtgttgtttg ... gctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTT
EST: AATGCAAAGATGTGAAGATCGACCGAGTCTATATTGG TTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGTTGTTEST: gi|211199607|gb|FL408270.1|FL408270
genomic: AATGCAAAGATGTGAAGATCGACCGAGTCTATATTGGgtgttgtttg ... gctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTT
EST: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGG TTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTTEST: gi|211413964|gb|FL425524.1|FL425524
genomic: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGGgtgttgtttg ... gctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTT
EST: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGG TTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTTEST: gi|211201683|gb|FL384209.1|FL384209
genomic: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGGgtgttgtttg ... gctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTT
EST: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGG TTCTTGCACTGGNGGTAANACCGAGGATTTNCTTGCTGCTGCAAAGGTGTTEST: gi|32849674|gb|CD989355.1|CD989355
genomic: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGGgtgttgtttg ... gctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTT
EST: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGG TTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTTEST: gi|31356659|gb|CD441016.1|CD441016
genomic: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGGgtgttgtttg ... gctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTT
EST: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGG TTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTTEST: gi|211181797|gb|FL472359.1|FL472359
genomic: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGGgtgttgtttg ... gctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTT
EST: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATA-TGG TTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGTTGTTEST: gi|33100114|gb|CF060074.1|CF060074
genomic: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGGgtgttgtttg ... gctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTT
EST: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGG TTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTTEST: gi|211282426|gb|FL393385.1|FL393385
genomic: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGGgtgttgtttg ... gctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTT
EST: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGG TTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTTEST: gi|211228096|gb|FL409262.1|FL409262
genomic: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGGgtgttgtttg ... gctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTT
EST: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGG TTCTTGCACTGGNGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTT
genomic: GCTCCAGCAAGAGAATGCAAAGATGTGAAGATCGACCGAGTCTATATTGGgtgttgtttg ... gctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTT
taacgttatcacttatccattacgttacaaatatttgaaccaaacgctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTTCTTAGCCTCG
atttaac putative branch site (score: 27)
ctacctt putative PPT
ttacaaatatttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttgtttggttcatgaaatgtaacgtaaagggtaatgttaatggtttccattcgattactggcggtaacaagtttgaatagtccggtatcaatttttagtatggtatctgattacggttggactaaaacaaacatgatttaacgttatcacttatccattacgttacaaatatttgaaccaaacgctaccttggTTCTTGCACTGGTGGTAAGACCGAGGATTTCCTTGCTGCTGCAAAGGTGTTCTTAGCCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG