1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agaactgttccttatttaaatacccaatatggaacctgtgccttttatcatcatctctttattggtctgaaaagaattgtatttgtttgtttaaatgaagGTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAG
species | Zea mays |
transcript | GRMZM2G133959_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTG GTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTTCA-GAGACTEST: gi|71431548|gb|DR812598.1|DR812598
genomic: TTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTGgtaagctttt ... ttaaatgaagGTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTT-CAAGAGACT
EST: TTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTG GTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTEST: gi|166689586|gb|EG105222.1|EG105222
genomic: TTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTGgtaagctttt ... ttaaatgaagGTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTT
EST: TTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTG GTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAA
genomic: TTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTGgtaagctttt ... ttaaatgaagGTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAA
tatcatcatctctttattggtctgaaaagaattgtatttgtttgtttaaatgaagGTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAG
tttgttt CT-rich tract
aaaagaattgtatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaactgttccttatttaaatacccaatatggaacctgtgccttttatcatcatctctttattggtctgaaaagaattgtatttgtttgtttaaatgaagGTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTCAGAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA