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gtgcttctgctctaaatgttttccttgacattaaaacaagcgcgcaattgttgtgctctgactatttggtgatacttgtgaagGTAAGCATGGCTCAGAAAATGGCAACTGTTGAGCGAGTAGAAGAGCTTCTCGAGAAGCTGCGTGCTGCTTCCTGGGATCATGCTGTCAAAG
species | Zea mays |
transcript | GRMZM2G133919_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTTNAGGCTAGAGAAGGCTAAACTTCTTGGCTACCAGAACTATGCTGAG GTAAGCATGGCTCAGAAAATGGCAACTGTTGAGCGAGTAGAAGAGCTTCTCEST: gi|32794079|gb|CD946315.1|CD946315
genomic: AGTTAAGGCTAGAGAAGGCTAAACTTCTTGGCTACAAGAACTATGCTGAGgtgcttctgc ... acttgtgaagGTAAGCATGGCTCAGAAAATGGCAACTGTTGAGCGAGTAGAAGAGCTTCTC
EST: TAAGGCTAGAGAAGGCTAAACTTCTTGGCTACAAGAACTATGCTGAG GTAAGCATGGCTCAGAAAATGGCAACTGTTGAGCGAGTAGAAGAGCTTCTCEST: gi|67026706|gb|CO455455.1|CO455455
genomic: TAAGGCTAGAGAAGGCTAAACTTCTTGGCTACAAGAACTATGCTGAGgtgcttctgc ... acttgtgaagGTAAGCATGGCTCAGAAAATGGCAACTGTTGAGCGAGTAGAAGAGCTTCTC
EST: CTAAACTTCTCGGCTACAAGAACTATGCTGAG GTAAGCATGGCTCAGAAAATGGCAACTGTTGAGCGAGTAGAAGAGCTTCTCEST: gi|211206209|gb|FL245888.1|FL245888
genomic: CTAAACTTCTTGGCTACAAGAACTATGCTGAGgtgcttctgc ... acttgtgaagGTAAGCATGGCTCAGAAAATGGCAACTGTTGAGCGAGTAGAAGAGCTTCTC
EST: AGTTAAGGCTAGAGAAGGCTAAACTTCTTGGCTACAAGAACTATGCTGAG GTAAGCATGGCTCAGAAGAATGGCAACTGTTGAGCGAGTAGAAGAGCTTCT
genomic: AGTTAAGGCTAGAGAAGGCTAAACTTCTTGGCTACAAGAACTATGCTGAGgtgcttctgc ... acttgtgaagGTAAGCATGGCTCAGAA-AATGGCAACTGTTGAGCGAGTAGAAGAGCTTCT
cattaaaacaagcgcgcaattgttgtgctctgactatttggtgatacttgtgaagGTAAGCATGGCTCAGAAAATGGCAACTGTTGAGCGAGTAGAAGAGCTTCTCGAGAAGCTGCGTGCTGCTTCCTGGGATCATGCTGTCAAAG
ctctgac putative branch site (score: 252)
aattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttctgctctaaatgttttccttgacattaaaacaagcgcgcaattgttgtgctctgactatttggtgatacttgtgaagGTAAGCATGGCTCAGAAAATGGCAACTGTTGAGCGAGTAGAAGAGCTTCTCGAGAAGCTGCGTGCTGCTTCCTGGGATCATGCTGTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG