1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...acttttggctagtgttattgaacttatctttgtatgacatgtgaaattactcaaactattctataagtgcttggcttctgatcacacattttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTGGTTCATACAGCCAGACAACTGCTGTGTATGCAGAGAATAATATGGAGCC
species | Zea mays |
transcript | GRMZM2G133749_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTG GTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTGEST: gi|71437477|gb|DR818527.1|DR818527
genomic: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTGgtatgtgaca ... ttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
EST: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTG GTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTGEST: gi|71449230|gb|DR830280.1|DR830280
genomic: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTGgtatgtgaca ... ttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
EST: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTG GTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTGEST: gi|37418378|gb|CF646857.1|CF646857
genomic: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTGgtatgtgaca ... ttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
EST: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTG GTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTGEST: gi|78084101|gb|DV512494.1|DV512494
genomic: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTGgtatgtgaca ... ttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
EST: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTG GTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
genomic: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTGgtatgtgaca ... ttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
attactcaaactattctataagtgcttggcttctgatcacacattttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTGGTTCATACAGCCAGACAACTGCTGTGTATGCAGAGAATAATATGGAGCC
ttctgat putative branch site (score: 50)
cattttc putative PPT
aaactattctataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttttggctagtgttattgaacttatctttgtatgacatgtgaaattactcaaactattctataagtgcttggcttctgatcacacattttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTGGTTCATACAGCCAGACAACTGCTGTGTATGCAGAGAATAATATGGAGCC
- - - -gctagtg
- - - - - - - - - - - - - - -ttgtatg
- - - - - - - - - - - - - - - - - - -catgtga
- - - - - - - - - - - - - - - - - - - - - - - - actcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcacaca