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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acttttggctagtgttattgaacttatctttgtatgacatgtgaaattactcaaactattctataagtgcttggcttctgatcacacattttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTGGTTCATACAGCCAGACAACTGCTGTGTATGCAGAGAATAATATGGAGCC

Basic information

species Zea mays
transcript GRMZM2G133749_T01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78110507|gb|DV528917.1|DV528917
EST:     CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTG                         GTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
genomic: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTGgtatgtgaca ... ttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
EST: gi|71437477|gb|DR818527.1|DR818527
EST:     CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTG                         GTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
genomic: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTGgtatgtgaca ... ttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
EST: gi|71449230|gb|DR830280.1|DR830280
EST:     CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTG                         GTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
genomic: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTGgtatgtgaca ... ttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
EST: gi|37418378|gb|CF646857.1|CF646857
EST:     CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTG                         GTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
genomic: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTGgtatgtgaca ... ttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
EST: gi|78084101|gb|DV512494.1|DV512494
EST:     CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTG                         GTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
genomic: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTGgtatgtgaca ... ttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attactcaaactattctataagtgcttggcttctgatcacacattttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTGGTTCATACAGCCAGACAACTGCTGTGTATGCAGAGAATAATATGGAGCC
                              ttctgat  putative branch site (score: 3)
                                         cattttc  putative PPT
       aaactattctataa  TA-rich tract