Sequence
atgc intronic sequence ATGC exonic sequencegtaagttaattccttgttgctcttgcgcaggagtgatacatgtgaactttgttctgagttttgctcagacggctgggttttcctccatattcacagtggctacaatttttttgttcagGATCATGTTGAAGGGTACCTTGCATTGTCAGGCAAAACCAAGACCTACTTTGCTACAGCTGTTTCACTATGGGACGCCGACTTTTATGTTAAGGTTGACG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G132866_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g06840.2 (Oryza sativa), 3'ss of exon 7
------------gtaagttaattccttgttgctcttgcgcaggagtgatacat---gtgaactttgttctgagttttgctcagacggctgggttttcctccatattcacagtggctacaatttttttgttcagGATCATGTTGAAGGGTACCTTGCATTGTCAGGCAAAACCAAGACCTACTTTGCTACAGCTGTTTCACTATGGGACGCCGACTTTTATGTTAAGGTTGACG
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gtaagacaagcacttgcttaattgcttattggtttttcatggatcgtatttatcaagtgactgtttctcctagaatcactgggaatgctat-ttcgcccccttatttattgtggtctaa----ctttattcagGATCATGTTGAAGGATACCTTGCACTATCTGGCAAAACCAAGACATACTTTGCTACGGCTGTTTCATTGTGGGATGCAGACTTTTATGTGAAGGTTGATG
upper sequence: GRMZM2G132866_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA12G31980.1 (Glycine max), 3'ss of exon 6
-----------------------------------------------gtaagttaattccttgttgctcttgcgcaggagtgata-catgtgaac-tttgttctgagttttgctcagacggctgg---gttttcctccatattcacagtggctacaatttttttgttcagGATCATGTTGAAGGGTACCTTGCATTGTCAGGCAAAACCAAGACCTACTTTGCTACAGCTGTTTCACTATGGGACGCCGACTTTTATGTTAAGGTTGACG
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gtaatgatcctctttgtcttattgctgttttccccgttgtctcttctatcatttgtctctacttgaataatcacttgataagatatcatggtcacatttatttgaaggaaaaattaaataaaaaaaaagaaatgcaacaagtttcaaac--ctctgttttgatttttcagGATCATGTTGAAGGATACCTTGAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATCAAAGTTGATG
upper sequence: GRMZM2G132866_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT1G05170.2 (Arabidopsis thaliana), 3'ss of exon 6
gtaagttaattccttgttgctcttgcgcaggagtgatacatgtgaactttgttctgagttttgctcag--acggctgggttttcctccatattcacagtggctacaatttttttgttcagGATCATGTTGAAGGGTACCTTGCATTGTCAGGCAAAACCAAGACCTACTTTGCTACAGCTGTTTCACTATGGGACGCCGACTTTTATGTTAAGGTTGACG
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--------------------------------gt-atagttctgaatatagttcactgtttaacaagtctaaggctagctctta-tcttcattctcattactcac--ttgttttttatagGACCATGTTGAAGGGTACCTAGAGTTGTCAGGCAAGACGAAAACTTACTTTTCTACAGCATTTTCGATGTGGGATGCAGATTTCTATGTCAAAGTAGATG
upper sequence: GRMZM2G132866_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT2G32430.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagttaattccttgttgctcttgcgcaggagtgatacatgtgaactttgttctgagttttgctcagacggctgggttttcctccatattcacagtggctacaatttttttgttcagGATCATGTTGAAGGGTACCTTGCATTGTCAGGCAAAACCAAGACCTACTTTGCTACAGCTGTTTCACTATGGGACGCCGACTTTTATGTTAAGGTTGACG
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-------------gtatttttttttctcaagtttaactctcgcgcttttggt----------gtccaaatccttgaatattggt-----ttctcattctctgctactttcac---cagGACCATGTTGAAGGATACCTTGAGTTATCAGGCAAAACGAAAACATATTTTTCTACAGCTGTTTCGAAGTGGGATGCAGAGTTCTATGTCAAAGTAGATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211309888|gb|FL092753.1|FL092753EST: ATAGAGCAATCGAAGCAGAGGACAGGAAGCATGGGGATTTCATGAGGATA GATCATGTTGAAGGGTACCTTGCATTGTCAGGAAAAACCAAGACCTACTTT
genomic: ATAGAGCAATCGAAGCAGAGGACAGGAAGCATGGGGATTTCATGAGGATAgtaagttaat ... ttttgttcagGATCATGTTGAAGGGTACCTTGCATTGTCAGGCAAAACCAAGACCTACTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcagacggctgggttttcctccatattcacagtggctacaatttttttgttcagGATCATGTTGAAGGGTACCTTGCATTGTCAGGCAAAACCAAGACCTACTTTGCTACAGCTGTTTCACTATGGGACGCCGACTTTTATGTTAAGGTTGACG
tttttttgttc CT-rich tract
tacaatttttttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttaattccttgttgctcttgcgcaggagtgatacatgtgaactttgttctgagttttgctcagacggctgggttttcctccatattcacagtggctacaatttttttgttcagGATCATGTTGAAGGGTACCTTGCATTGTCAGGCAAAACCAAGACCTACTTTGCTACAGCTGTTTCACTATGGGACGCCGACTTTTATGTTAAGGTTGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT