Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctaacttcaatgttttgttccatgttctttgttctttgtgtacactatatcaccaaccatgttccttcctgatctttggacagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCA

Basic information

species Zea mays
transcript GRMZM2G132144_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132144_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 3
---gttctaactt--caat--gtttt-------gttccatgttctttgttctttgtgtacactatatcaccaaccatgttccttcctgatctttgg-acagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCA
   |||||   ||  || |  || ||       | | ||||||||| |||  |||||   |  ||||    ||    |     |  ||| |||||   ||||| ||  |||||||| |||| ||| | || | ||| ||||||||||||||||||  |||||||||||| ||||| ||||| ||||| ||||     || |
gttgttcttgtttgtcagttggtctttggagtagatgcatgttctt-gtttgttgtgcttaaaatatt--taatatagactggtggtgaactttgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGGAGAACACAAATAA

upper sequence: GRMZM2G132144_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA02G33770.1 (Glycine max), 3'ss of exon 3
-----------------------------------------------gttctaacttcaatgtt----ttgttccatgttctttgttctttgtgtacactatatcaccaaccatgttccttcctgatctttgg-acagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCA
                                                || | | || |   ||    | | | ||||||||| |||  || ||   | ||||| |      || |    |  ||| ||| |   ||||| ||  |||||||| |||| ||| | || | ||| ||||||||||||||||||  |||||||||||| ||||| ||||| ||||| ||||     || |
gttgttcttgtttgtcagttgatctttggagtagatgcatgttcttgtttgtcagttgatctttggagtagatgcatgttctt-gtttgttatgcttaatatatta------atatagactggtgaacttcgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGGAGAACACAAATAA

upper sequence: GRMZM2G132144_T01 (Zea mays), 3'ss of exon 6
lower sequence: AT3G57290.1 (Arabidopsis thaliana), 3'ss of exon 3
gttctaacttcaa---tgttttgttccatgttctttgttctttgtgtacactatatcaccaaccatgttccttcctgatc-tttggacagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCA
|||   | || ||   | || |  |    |  |||||   |   | || | | |   |  |   ||| |   | |   |  |||   ||||  || ||||| ||  | || ||| | ||||||||||| ||| |||||||||||| |||||  ||||| ||||||||||| ||||| || |    |||||
gttagtatttaaaacttcttctagtttgcgacctttgaaatcaatataga-tgtgagagtatatatgctaactaccatttgttttttcagAGTTTTTCATCGCCGTTAAACCAGGTGCAGAACAGGATTTGGTTGATGCATTGGGGTCTGTATATCTTTTTTAACCATGATAATGGAAGGACACAGATCA

upper sequence: GRMZM2G132144_T01 (Zea mays), 3'ss of exon 6
lower sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 3
---gttctaacttcaatgtt--ttgttccatgttctttgttctttgtgtacactatatc-accaaccatgttccttcctgatctttggacagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCA
     | | |  |  || ||  ||| ||  |    |||||| | | || |   |||||   | || ||||     || ||         ||||  | | | ||||||||||||||| | || |  || |||||||| |||||||||  ||| |||||||| || |||||||| |||||  |||     || |
gtcactgtcatatgcatattggttgctctgtacagtttgttttgt-tgcatgatatatttgctaatcatgagttctcttg---------cagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATTGGAGTCTCTTCATCTTTTTCAACCATGACAATGGGCGAACACACATAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttctttgtgtacactatatcaccaaccatgttccttcctgatctttggacagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCA
                                      tcctgat  putative branch site (score: 3)
                                 ttccttcctgatcttt  CT-rich tract
               actatat  TA-rich tract