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...tgtcttatggagtatattatgccctagatttggctagttacctggttttgagattgctgtcacacagatggattgtgtaacaataaatttttcttggcagGTTTTGCATGACGCGTTCTTCAAATATCAGACAAAACCCAAGCTGTCTAGTCATGGTGATCTGTATTATGAAGGCAAAGAATTTGAG
species | Zea mays |
transcript | GRMZM2G132060_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAG GTTTTGCATGACGCGTTCTTCAAATATCAGACAAAACCCAAGCTGTCTAGTEST: gi|13382081|gb|BG458756.1|BG458756
genomic: AGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAGgtagactcct ... ttcttggcagGTTTTGCATGACGCGTTCTTCAAATATCAGACAAAACCCAAGCTGTCTAGT
EST: AGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAG GTTTTGCATGACGCGTTCTTCAAATATCACACAAAACCCAAGCTGTCTAGTEST: gi|148931686|gb|EC874876.2|EC874876
genomic: AGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAGgtagactcct ... ttcttggcagGTTTTGCATGACGCGTTCTTCAAATATCAGACAAAACCCAAGCTGTCTAGT
EST: AGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAG GTTTTGCATGAEST: gi|13382209|gb|BG458884.1|BG458884
genomic: AGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAGgtagactcct ... ttcttggcagGTTTTGCATGA
EST: AGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAG GTTTTGCATGACGCGTCTCTTCAAATATCAGACAAAACCCAAGCTGTCTAGEST: gi|21843267|gb|BQ703848.1|BQ703848
genomic: AGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAGgtagactcct ... ttcttggcagGTTTTGCATGACGCGT-TCTTCAAATATCAGACAAAACCCAAGCTGTCTAG
EST: AGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAG GTTTTGCATGACGCGTTCTTCAAATATCAGACAAAACCCAAGCTGTCTAGTEST: gi|148931684|gb|EC874873.2|EC874873
genomic: AGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAGgtagactcct ... ttcttggcagGTTTTGCATGACGCGTTCTTCAAATATCAGACAAAACCCAAGCTGTCTAGT
EST: AGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAG GTTTTGCATGACGCGEST: gi|26557871|gb|CA830106.1|CA830106
genomic: AGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAGgtagactcct ... ttcttggcagGTTTTGCATGACGCG
EST: AGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAG GTTTTGCATGACGCGTTCTTCAAATATCAGACAAAACCCAAGCTGTCEST: gi|148966452|gb|EE017460.2|EE017460
genomic: AGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAGgtagactcct ... ttcttggcagGTTTTGCATGACGCGTTCTTCAAATATCAGACAAAACCCAAGCTGTC
EST: AGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAG GTTTTGCATGACGCGTTCTTCAAATATCAGAACAAA-CCCAAGCTGTCTAGEST: gi|21843287|gb|BQ703868.1|BQ703868
genomic: AGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAGgtagactcct ... ttcttggcagGTTTTGCATGACGCGTTCTTCAAATATCAGA-CAAAACCCAAGCTGTCTAG
EST: AGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAG GGTTTGCATGACGCGTTCTTCAAATATCAGACAAAACCCAAGCTGTCTAGT
genomic: AGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAGgtagactcct ... ttcttggcagGTTTTGCATGACGCGTTCTTCAAATATCAGACAAAACCCAAGCTGTCTAGT
ttttgagattgctgtcacacagatggattgtgtaacaataaatttttcttggcagGTTTTGCATGACGCGTTCTTCAAATATCAGACAAAACCCAAGCTGTCTAGTCATGGTGATCTGTATTATGAAGGCAAAGAATTTGAG
gtgtaac putative branch site (score: 3)
tttttctt putative PPT
attgtgtaacaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcttatggagtatattatgccctagatttggctagttacctggttttgagattgctgtcacacagatggattgtgtaacaataaatttttcttggcagGTTTTGCATGACGCGTTCTTCAAATATCAGACAAAACCCAAGCTGTCTAGTCATGGTGATCTGTATTATGAAGGCAAAGAATTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA