1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaacatccatcaagtactcagcgttgcattgcattggctgatccagtgcacatgctgatctgcgatctgcagGGCGCGTACGCAAATGGGAGCATGGGAGACCCAGCTCTCGGATACACAGGGTCGATCGATCCAG
species | Zea mays |
transcript | GRMZM2G131961_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGAAGCTGGCCCAGCTAGAGCTGGAGCTTCAACGGGCTCGACGGCAGCAG GGCGCGTACGCAAATGGGAGCATGGGAGACCCAGCTCTCGGATACACAGGGEST: gi|30307046|gb|CD001719.1|CD001719
genomic: TGAAGCTGGCCCAGCTAGAGCTGGAGCTTCAACGGGCTCGACGGCAGCAGgtaacatcca ... cgatctgcagGGCGCGTACGCAAATGGGAGCATGGGAGACCCAGCTCTCGGATACACAGGG
EST: TGAAGCTGGCCCAGCTAGAGCTGGAGCTTCAACGGGCTCGACGGCAGCAG GGCGCGTACGCAAATGGGAGCATGGGAGACCCAGCTCTCGGATACACAGGGEST: gi|211079216|gb|FL043558.1|FL043558
genomic: TGAAGCTGGCCCAGCTAGAGCTGGAGCTTCAACGGGCTCGACGGCAGCAGgtaacatcca ... cgatctgcagGGCGCGTACGCAAATGGGAGCATGGGAGACCCAGCTCTCGGATACACAGGG
EST: TGAAGCTGGCCCAGCTAGAGCTGGAGCTTCAACGGGCTCGACGGCAGCAG GGCGCGTACGCAAATGGGAGCATGGGAGACCCAGCTCTCGGATACACAGGGEST: gi|149089928|gb|EE179215.2|EE179215
genomic: TGAAGCTGGCCCAGCTAGAGCTGGAGCTTCAACGGGCTCGACGGCAGCAGgtaacatcca ... cgatctgcagGGCGCGTACGCAAATGGGAGCATGGGAGACCCAGCTCTCGGATACACAGGG
EST: TGAAGCTGGCCCAGCTAGAGCTGGAGCTTCAACGGGCTCGACGGCAGCAG GGCGCGTACGCAAATGGGAGCATGGGAGACCCAGCTCTCGGATACACAGGGEST: gi|148948317|gb|EC893834.2|EC893834
genomic: TGAAGCTGGCCCAGCTAGAGCTGGAGCTTCAACGGGCTCGACGGCAGCAGgtaacatcca ... cgatctgcagGGCGCGTACGCAAATGGGAGCATGGGAGACCCAGCTCTCGGATACACAGGG
EST: TGAAGCTGGCCCAGCTAGAGCTGGAGCTTCAACGGGCTCGACGGCAGCAG GGCGCGTACGCAAATGGGAGCATGGGAGACCCAGCTCTCGGATACACAGGG
genomic: TGAAGCTGGCCCAGCTAGAGCTGGAGCTTCAACGGGCTCGACGGCAGCAGgtaacatcca ... cgatctgcagGGCGCGTACGCAAATGGGAGCATGGGAGACCCAGCTCTCGGATACACAGGG
tcagcgttgcattgcattggctgatccagtgcacatgctgatctgcgatctgcagGGCGCGTACGCAAATGGGAGCATGGGAGACCCAGCTCTCGGATACACAGGGTCGATCGATCCAG
tgctgat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatccatcaagtactcagcgttgcattgcattggctgatccagtgcacatgctgatctgcgatctgcagGGCGCGTACGCAAATGGGAGCATGGGAGACCCAGCTCTCGGATACACAGGGTCGATCGATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC