1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cattaagctctacgaatatgaggcttttctgtgactattttagatattgtttactttcttattttgagtattaagatatcagttctttcacttgatgcagGTTATTCGGTTGACGAAGTTTGATTATAGATTAGCAAATAGGTTGCAAACTGACTTGCAAAAGTTGAGATGTAGAGTCAACTATCATGCATTGAGATTTA
species | Zea mays |
transcript | GRMZM2G131699_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGAGCGGTGTTACTTGAACCGTGTTTTGCCTGCACTTCTTAAGAAACAT GTTATTCGGTTGACGAAGTTTGATTATAGATTAGCAAATAGGTTGCAAACTEST: gi|76010763|gb|DT937933.1|DT937933
genomic: CTGAGCGGTGTTACTTGAACCGTGTTTTGCCTGCACTTCTTAAGAAACATgtaagtcatt ... cttgatgcagGTTATTCGGTTGACGAAGTTTGATTATAGATTAGCAAATAGGTTGCAAACT
EST: CTGAGCGGTGTTACTTGAACCGTGTTTTGCCTGCACTTCTTA-GAAACAT GTTATTCGGTTGEST: gi|149110252|gb|EE190310.2|EE190310
genomic: CTGAGCGGTGTTACTTGAACCGTGTTTTGCCTGCACTTCTTAAGAAACATgtaagtcatt ... cttgatgcagGTTATTCGGTTG
EST: CTGAGCGGTGTTACTTGAACCGTGTTTTGCCTGCACTTCTTAAGAA-CAT GTTATTCGGTTGACGAAGTTTGATTATAGATTAGCAAATAGGTTGCAAACT
genomic: CTGAGCGGTGTTACTTGAACCGTGTTTTGCCTGCACTTCTTAAGAAACATgtaagtcatt ... cttgatgcagGTTATTCGGTTGACGAAGTTTGATTATAGATTAGCAAATAGGTTGCAAACT
attgtttactttcttattttgagtattaagatatcagttctttcacttgatgcagGTTATTCGGTTGACGAAGTTTGATTATAGATTAGCAAATAGGTTGCAAACTGACTTGCAAAAGTTGAGATGTAGAGTCAACTATCATGCATTGAGATTTA
acttgat putative branch site (score: 29)
ttctttcactt CT-rich tract
ttattttgagtattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattaagctctacgaatatgaggcttttctgtgactattttagatattgtttactttcttattttgagtattaagatatcagttctttcacttgatgcagGTTATTCGGTTGACGAAGTTTGATTATAGATTAGCAAATAGGTTGCAAACTGACTTGCAAAAGTTGAGATGTAGAGTCAACTATCATGCATTGAGATTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - ttttctg