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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactcttaatttcttctgtttctgtggataaatccttgtatttgtattttatttaattgactttctttttgcagAGTTTGTACAGGTTTTGTCTCGCTCACACCTCAAAATGCGAGTCTGGGAACGTGGTGCTG

Basic information

species Zea mays
transcript GRMZM2G130332_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130332_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os12g37960.1 (Oryza sativa), 3'ss of exon 6
gtaactcttaatt------------tcttctgtttctgtggataaatccttgtatttgtattttatttaattgactttctttttgcagAGTTTGTACAGGTTTTGTCTCGCTCACACCTCAAAATGCGAGTCTGGGAACGTGGTGCTG
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gttactcttaattattatagaaccgtatgccttctattcatacatattcttgcatttgagtttacttaaattaattttcttct-gcagAATTTGTAGAGGTCCTGTCTCGCTCACACCTCAAAATGAGAGTCTGGGAGCGTGGTGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211026296|gb|FL344450.1|FL344450
EST:     TGGGCCTAAATTTGAGCATCATGAAATGTTTCCTGCTCGCACAAACACAG                         AGTTTGTACAGGTTTTGTCTCGCTCACACCTCAAAATGCGAGTCTGGGAAC
genomic: TGGGCCTAAATTTGAGCATCATGAAATGTTTCCTGCTCGCACAAACACAGgtaactctta ... ctttttgcagAGTTTGTACAGGTTTTGTCTCGCTCACACCTCAAAATGCGAGTCTGGGAAC
EST: gi|24773782|gb|CA409036.1|CA409036
EST:     TGGGCCTAAATTTGAGCATCATGAAATGTTTCCTGCTCGCACAAACACAG                         AGTTTGTACAGGTTTTGTCTCGCTCACACCTCAAAATGCGAGTCTGGGAAC
genomic: TGGGCCTAAATTTGAGCATCATGAAATGTTTCCTGCTCGCACAAACACAGgtaactctta ... ctttttgcagAGTTTGTACAGGTTTTGTCTCGCTCACACCTCAAAATGCGAGTCTGGGAAC
EST: gi|71329026|gb|DR801212.1|DR801212
EST:     TGGGCCTAAATTTGAGCATCATGAAATGTTTCCTGCTCGCACAAACACAG                         AGTTTGTACAGGTTTTGTCTCGCTCACACCT
genomic: TGGGCCTAAATTTGAGCATCATGAAATGTTTCCTGCTCGCACAAACACAGgtaactctta ... ctttttgcagAGTTTGTACAGGTTTTGTCTCGCTCACACCT
EST: gi|76014966|gb|DT942136.1|DT942136
EST:     TGGGCCTAAATTTGAGCATCATGAAATGTTTCCTGCTCGCACAAACACAG                         AGTTTGTACAGGTTTTGTCTCGCTCACACCTCAAAATGCGAGTCTGGGGAC
genomic: TGGGCCTAAATTTGAGCATCATGAAATGTTTCCTGCTCGCACAAACACAGgtaactctta ... ctttttgcagAGTTTGTACAGGTTTTGTCTCGCTCACACCTCAAAATGCGAGTCTGGGAAC
EST: gi|148961806|gb|EE012586.2|EE012586
EST:     TGGGCCTAAATTTGAGCATCATGAAATGTTTCCTGCTCGCACAAACACAG                         AGTTTGGACAGGTTT
genomic: TGGGCCTAAATTTGAGCATCATGAAATGTTTCCTGCTCGCACAAACACAGgtaactctta ... ctttttgcagAGTTTGTACAGGTTT
EST: gi|71443835|gb|DR824885.1|DR824885
EST:     TGGGCCTAAATTTGAGCATCATGAAATGTTTCCTGCTCGCACAAACACAG                         AGTTTGTACAGGTTTTGTCTCGCTCACACCTCAAAATGCGAGTCTG
genomic: TGGGCCTAAATTTGAGCATCATGAAATGTTTCCTGCTCGCACAAACACAGgtaactctta ... ctttttgcagAGTTTGTACAGGTTTTGTCTCGCTCACACCTCAAAATGCGAGTCTG
EST: gi|148970899|gb|EE021693.2|EE021693
EST:     TGGGCCTAAATTTGAGCATCATGAAATGTTTCCTGCTCGCACAAACACAG                         AGTTTGTACAGGTTTTGTCTCGCTCACACCTCAAAAT
genomic: TGGGCCTAAATTTGAGCATCATGAAATGTTTCCTGCTCGCACAAACACAGgtaactctta ... ctttttgcagAGTTTGTACAGGTTTTGTCTCGCTCACACCTCAAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgtggataaatccttgtatttgtattttatttaattgactttctttttgcagAGTTTGTACAGGTTTTGTCTCGCTCACACCTCAAAATGCGAGTCTGGGAACGTGGTGCTG
                                   aattgac  putative branch site (score: 3)
                                     ttgactttcttttt  CT-rich tract
                ttgtatttgtatttta  TA-rich tract