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...attttaaaaaatcgtattcattttgctgaagttacttggctttttacactgctatttcttcattcctgctcatcgcatatcattcattttttgcccacagATCTCCTGTGATGCCAAGGATAAAATACTTCATATCCTTGCACTTCTAAAGTTTGAGCTCATTCAGAAGAAAGTTCTTATATTTGTAAACTCAATTGATA
species | Zea mays |
transcript | GRMZM2G129554_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGGTCAAGTTAAGGATGATGTGATCCCCAAAAATGTTCAGCAGTTTTGG ATCTCCTGTGATGCCAAGGATAAAATACTTCATATCCTTGCACTTCTAAAGEST: gi|211412133|gb|FL450831.1|FL450831
genomic: TTGGTCAAGCAAAGGATGATGTGATCCCCAAAAATGTTCAGCAGTTTTGGgcaagtatct ... ttgcccacagATCTCCTGTGATGCCAAGGATAAAATACTTCATATCCTTGCACTTCTAAAG
EST: GTCAAGCAAAGGATGATGTGATCCCCAAAAATGTTCAGCAGTTTTGG ATCTCCTGTGATGCCAAGGATAAAATACTTCATATCCTTGCACTTCTAAAGEST: gi|31349879|gb|CD434236.1|CD434236
genomic: GTCAAGCAAAGGATGATGTGATCCCCAAAAATGTTCAGCAGTTTTGGgcaagtatct ... ttgcccacagATCTCCTGTGATGCCAAGGATAAAATACTTCATATCCTTGCACTTCTAAAG
EST: TTGGTCAAGCAAAGGATGATGTGATCCCCAAAAATGTTCAGCAGTTTTGG ATCTCCTGTGATGCCAAGGATAAAATACTTCATATCCTTGCACTTCTAAAGEST: gi|32935293|gb|CF040105.1|CF040105
genomic: TTGGTCAAGCAAAGGATGATGTGATCCCCAAAAATGTTCAGCAGTTTTGGgcaagtatct ... ttgcccacagATCTCCTGTGATGCCAAGGATAAAATACTTCATATCCTTGCACTTCTAAAG
EST: GGTCAAGCAAAGGATGATGTGATCCCCAAAAATGTTCAGCAGTTTTGG ATCTCCTGTGATGCCAAGGATAAAATACTTCATATCCTTGCACTTCTAAAG
genomic: GGTCAAGCAAAGGATGATGTGATCCCCAAAAATGTTCAGCAGTTTTGGgcaagtatct ... ttgcccacagATCTCCTGTGATGCCAAGGATAAAATACTTCATATCCTTGCACTTCTAAAG
acactgctatttcttcattcctgctcatcgcatatcattcattttttgcccacagATCTCCTGTGATGCCAAGGATAAAATACTTCATATCCTTGCACTTCTAAAGTTTGAGCTCATTCAGAAGAAAGTTCTTATATTTGTAAACTCAATTGATA
ttcattttttgccc CT-rich tract
atatcattcatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttaaaaaatcgtattcattttgctgaagttacttggctttttacactgctatttcttcattcctgctcatcgcatatcattcattttttgcccacagATCTCCTGTGATGCCAAGGATAAAATACTTCATATCCTTGCACTTCTAAAGTTTGAGCTCATTCAGAAGAAAGTTCTTATATTTGTAAACTCAATTGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - -aaaaaat
- - - - - - - - ttcattt
- - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - -ttacttg
- - - - - - - - - - - - - - - - - - - - - - -acactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcat