1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacgtatttctatatgttttggcaattcttaacgatttattccatcgccttgtcttagttgtgggttgcccttgacgcagTGCGCTGATTTGTTTGAAAAATGCCCCAAACATACCGGCAAAAAACTTTCATGCATTGACGAGGTTGGATGAAAATAGAGCAAAGTGCCAG
species | Zea mays |
transcript | GRMZM2G129513_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCCTCGCGGAACGCGAAAGTCTTAGTTGTTGGAAATCCCTGTAACACTAA TGCGCTGATTTGTTTGAAAAATGCGCCAAACATACCGGCAAANAACTTTCAEST: gi|32916975|gb|CF021787.1|CF021787
genomic: GCCTCGCGGAACGCGAAAGTCTTAGTTGTCGGAAATCCCTGTAACACTAAgtacgtattt ... cttgacgcagTGCGCTGATTTGTTTGAAAAATGCCCCAAACATACCGGCAAAAAACTTTCA
EST: GCCTCGCGGAACGCGAAAGTCTTAGTTGTTGGAAATCCCTGTAACACTAA TGCGCTGATTTGTTTGAAAAATGCCCCAAACATACCGGCAAAAAACTTTCAEST: gi|211398041|gb|FL283723.1|FL283723
genomic: GCCTCGCGGAACGCGAAAGTCTTAGTTGTCGGAAATCCCTGTAACACTAAgtacgtattt ... cttgacgcagTGCGCTGATTTGTTTGAAAAATGCCCCAAACATACCGGCAAAAAACTTTCA
EST: GCCTCGCGGAACGCGAAAGTCTTAGTTGTTGGAAATCCCTGTAACACTAA TGCGCTGATTTGTTTGAAAAATGCGCCAAACATACCGGCAAAAAACTTTCAEST: gi|211398042|gb|FL283724.1|FL283724
genomic: GCCTCGCGGAACGCGAAAGTCTTAGTTGTCGGAAATCCCTGTAACACTAAgtacgtattt ... cttgacgcagTGCGCTGATTTGTTTGAAAAATGCCCCAAACATACCGGCAAAAAACTTTCA
EST: GCCTCGCGGAACGCGAAAGTCTTAGTTGTTGGAAATCCCTGTAACACTAA TGCGCTGATTTGTTTGAAAAATGCGCCAAACATACCGGCAAAAAACTTTCAEST: gi|211395432|gb|FL283722.1|FL283722
genomic: GCCTCGCGGAACGCGAAAGTCTTAGTTGTCGGAAATCCCTGTAACACTAAgtacgtattt ... cttgacgcagTGCGCTGATTTGTTTGAAAAATGCCCCAAACATACCGGCAAAAAACTTTCA
EST: GCCTCGCGGAACGCGAAAGTCTTAGTTGTTGGAAATCCCTGTAACACTAA TGCGCTGATTTGTTTGAAAAATGCGCCAAACATACCGGCAAAAAACTTTCAEST: gi|13558383|gb|BG549739.1|BG549739
genomic: GCCTCGCGGAACGCGAAAGTCTTAGTTGTCGGAAATCCCTGTAACACTAAgtacgtattt ... cttgacgcagTGCGCTGATTTGTTTGAAAAATGCCCCAAACATACCGGCAAAAAACTTTCA
EST: GCCTCGCGGAACGCGAAAGTCTTAGTTGTCGGAAATCCCTGTAACACTAA TGCGCTGATTTGTTTGAAAAATGCCCCAAACATACCGGCAAAAAACTTTCAEST: gi|13490961|gb|BG517725.1|BG517725
genomic: GCCTCGCGGAACGCGAAAGTCTTAGTTGTCGGAAATCCCTGTAACACTAAgtacgtattt ... cttgacgcagTGCGCTGATTTGTTTGAAAAATGCCCCAAACATACCGGCAAAAAACTTTCA
EST: GCCTCGCGGAACGCGAAAGTCTTAGTTGTCGGAAATCCCTGTAACACTAA TGCGCTGATTTGTTTGAAAAATGCCCCAAACATACCGGCAAAAAACTTTCAEST: gi|30705491|gb|CD058800.1|CD058800
genomic: GCCTCGCGGAACGCGAAAGTCTTAGTTGTCGGAAATCCCTGTAACACTAAgtacgtattt ... cttgacgcagTGCGCTGATTTGTTTGAAAAATGCCCCAAACATACCGGCAAAAAACTTTCA
EST: GCCTCGCGGAACGCGAAAGTCTTAGTTGTCGGAAATCCCTGTAACACTAA TGCGCTGATTTGTTTGAAAAATGCCCCAAACATACCGGCAAAAAACTTTCA
genomic: GCCTCGCGGAACGCGAAAGTCTTAGTTGTCGGAAATCCCTGTAACACTAAgtacgtattt ... cttgacgcagTGCGCTGATTTGTTTGAAAAATGCCCCAAACATACCGGCAAAAAACTTTCA
ttcttaacgatttattccatcgccttgtcttagttgtgggttgcccttgacgcagTGCGCTGATTTGTTTGAAAAATGCCCCAAACATACCGGCAAAAAACTTTCATGCATTGACGAGGTTGGATGAAAATAGAGCAAAGTGCCAG
ttgccctt CT-rich tract
atttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtatttctatatgttttggcaattcttaacgatttattccatcgccttgtcttagttgtgggttgcccttgacgcagTGCGCTGATTTGTTTGAAAAATGCCCCAAACATACCGGCAAAAAACTTTCATGCATTGACGAGGTTGGATGAAAATAGAGCAAAGTGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG