Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacagtcacaattttatccttctcagttggaaatctttttgtgctccgtcatcgattgtttatcgtgatgtgattcacgtcttccatgctacaactgttaccttttttggaaacgaggcattttgtttttgtttttacctacgtctggtacattttttccattttaaaatgacaaacagGTACCATCCTACGAGATGCTTGGCATTCCGAAGCATGAAGAAGAAGCACCTCCCCCTCCACAACCGCAACACCCTCTTTCTCCCATGGGCGAGGCCTGTT

Basic information

species Zea mays
transcript GRMZM2G127050_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127050_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g04050.1 (Oryza sativa), 3'ss of exon 6
gtaacagtcacaattttatccttctcagttggaaatctttttgtgctccgtcatcgattgtttatcgtgatgtgattcacgtcttccatgctacaactgttaccttttttggaaacgaggcattttgtttttgtttttacctacgtctggtacattttttccattttaaaatgacaaacagGTACCATCCTACGAGATGCTTGGCATTCCGAAGCATGAAGAAGAAGCACCTCCCCCTCC-ACAACCGCAACACCCTCTTTCTCCCATGGGCGAGGCCTGTT--
                               | || | || |||  |   || |   || | ||     || |  ||   |||||  ||| |  ||      |||| |||   ||       | | | |    | |||      | |||    | ||||   |||||||||| |||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||  ||||  |  | ||  || |  |     | ||    |     || |   
-------------------------------gtaaccattgtgt-ttttatccttacttttcta----aatcttttttctgtctttgatggtttaa-----gccttctttactaatt-----tatggctgccatattt-----tgactgacctaatttt---attttaaaat-acaaacagGTGCCTTCCTATGAGATGCTTGGCATTCCAAAGCATGAAGAAGAAGCACCTCCTGCTCCTGCTCCTGCTCCAGCTCCACAACCACA---ACACCCTCTATCCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71310550|gb|DR791570.1|DR791570
EST:     ACACTAAAAAGCTAGTTTCCGTACTTGAGCCCTTGCAAATAAAATCAGAG                         GTACCATCCTACGAGATGCTTGGCATTCCGAAGCATGAAGAAGAAGCACCT
genomic: ACACTAAAAAGCTGGTTTCCGTACTTGAGCCCTTGCAAATAAAATCAGAGgtaacagtca ... tgacaaacagGTACCATCCTACGAGATGCTTGGCATTCCGAAGCATGAAGAAGAAGCACCT
EST: gi|32919403|gb|CF024215.1|CF024215
EST:     ACACTAAAAAGCTGGTTTCCGTACTTGAGCCCTTGCAAATAAAATCAGAG                         GTACCATCCTACGAGATGCTTGGCATTCCGAAGCATGAAGAAGAAGCACCT
genomic: ACACTAAAAAGCTGGTTTCCGTACTTGAGCCCTTGCAAATAAAATCAGAGgtaacagtca ... tgacaaacagGTACCATCCTACGAGATGCTTGGCATTCCGAAGCATGAAGAAGAAGCACCT
EST: gi|32919355|gb|CF024167.1|CF024167
EST:     ACACTAAAAAGCTGGTTTCCGTACTTGAGCCCTTGCAAATAAAATCAGAG                         GTACCATCCTACGAGATGCTTGGCATTCCGAAGCATGAAGAAGAAGCACCT
genomic: ACACTAAAAAGCTGGTTTCCGTACTTGAGCCCTTGCAAATAAAATCAGAGgtaacagtca ... tgacaaacagGTACCATCCTACGAGATGCTTGGCATTCCGAAGCATGAAGAAGAAGCACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttgtttttacctacgtctggtacattttttccattttaaaatgacaaacagGTACCATCCTACGAGATGCTTGGCATTCCGAAGCATGAAGAAGAAGCACCTCCCCCTCCACAACCGCAACACCCTCTTTCTCCCATGGGCGAGGCCTGTT
                        tacattttttccattt  TA-rich tract