1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagcgccctcccccctgcccctctcgctcgctgatccctccctttttgtaactgtacggagcgaaaaaaagaaggttaaatcaggatgcatgcatttatatatacatatatgcacgcagCCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGGAGAACCTCAAGTGGCTGCATGTGTTCAA
species | Zea mays |
transcript | GRMZM2G126900_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACC CCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGGEST: gi|31363556|gb|CD447913.1|CD447913
genomic: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACCgtaagcgccc ... atgcacgcagCCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGG
EST: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACC CACTGCACAAGCATGGAGCCTACACGCACCTGATGGACGATGAGGACAAGGEST: gi|78119916|gb|DV538300.1|DV538300
genomic: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACCgtaagcgccc ... atgcacgcagCCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGG
EST: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACC CCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGGEST: gi|60396286|gb|DN229155.1|DN229155
genomic: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACCgtaagcgccc ... atgcacgcagCCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGG
EST: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACC CCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGGEST: gi|14996932|gb|BI319072.1|BI319072
genomic: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACCgtaagcgccc ... atgcacgcagCCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGG
EST: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACC CCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGGEST: gi|15554177|gb|BI644175.1|BI644175
genomic: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACCgtaagcgccc ... atgcacgcagCCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGG
EST: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACC CCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGGEST: gi|15057218|gb|BI361190.1|BI361190
genomic: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACCgtaagcgccc ... atgcacgcagCCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGG
EST: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACC CCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGGEST: gi|45847402|gb|CN071345.1|CN071345
genomic: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACCgtaagcgccc ... atgcacgcagCCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGG
EST: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACC CCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGGEST: gi|14996904|gb|BI319057.1|BI319057
genomic: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACCgtaagcgccc ... atgcacgcagCCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGG
EST: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACC CCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGGEST: gi|76923453|gb|DV169495.1|DV169495
genomic: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACCgtaagcgccc ... atgcacgcagCCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGG
EST: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACC CCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGGEST: gi|211354362|gb|FL217076.1|FL217076
genomic: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACCgtaagcgccc ... atgcacgcagCCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGG
EST: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACC CACTGCACAAGCATGGAGCCTACACGCACCTGATGGACGATGAGGACAAGG
genomic: CACCCTTCCTTCCGCGGGGCTGTTCATCATCAGATACCACTCGTTCTACCgtaagcgccc ... atgcacgcagCCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGG
aaaaaagaaggttaaatcaggatgcatgcatttatatatacatatatgcacgcagCCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGGAGAACCTCAAGTGGCTGCATGTGTTCAA
atgcatttatatatac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgccctcccccctgcccctctcgctcgctgatccctccctttttgtaactgtacggagcgaaaaaaagaaggttaaatcaggatgcatgcatttatatatacatatatgcacgcagCCCTGCACAAGCATGGAGCCTACACACACCTGATGGACGATGAGGACAAGGAGAACCTCAAGTGGCTGCATGTGTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA