1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgtggacatgtggttgtgtacactgttgcacttgattacctgattcagtgcatgggattaatgttgtgctattgtggtcaatcgtttccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTCTGTGATTGGCTTAGTACAAGTTTTGGCTGATTATTTGTTGTCTCATACT
species | Zea mays |
transcript | GRMZM2G126594_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGACCCAGTGAAGAAAGAG GCCGAGTCTCAGATCGCACCCAGGAAGGCTTAGAGAAGGGGCTCTATCTTCEST: gi|71301597|gb|DR786861.1|DR786861
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTCEST: gi|14997333|gb|BI319308.1|BI319308
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAG GCTGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTCEST: gi|50333910|gb|CO529036.1|CO529036
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
EST: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG GCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
genomic: GCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtggac ... tccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTC
gattcagtgcatgggattaatgttgtgctattgtggtcaatcgtttccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTCTGTGATTGGCTTAGTACAAGTTTTGGCTGATTATTTGTTGTCTCATACT
gattaat putative branch site (score: 164)
tcgtttccttttc putative PPT
attaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtggacatgtggttgtgtacactgttgcacttgattacctgattcagtgcatgggattaatgttgtgctattgtggtcaatcgtttccttttcagGCCGAGTCTCAGATCGCAACCAGGAAGGCTTAGAGAAGGGGCTCTATCTTCTGTGATTGGCTTAGTACAAGTTTTGGCTGATTATTTGTTGTCTCATACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT