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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtctctcccaatttaagcttcagttgttttgcaacttgggtatcttgttaaacaacaactttctggtatggtctctcccaattcttgcagGCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCTGATTACAACAAAATAAGCATGTCTTACGAAACTCAAAGTGTTGCCGAGG

Basic information

species Zea mays
transcript GRMZM2G125556_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G125556_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g40890.2 (Oryza sativa), 3'ss of exon 6
gtatggtctctcccaattt-aagcttcagttgttttgcaacttgggtatcttgttaaacaacaactttctggtatggtctctcccaattcttgcagGCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGC--TGATTACA-ACAAAATAAGCATGTCTTACGAAACTCA-AAGTGTTGCCGAGG
|||||| ||||| || ||| |||  | |||  ||| |     |   | |||  ||  |     |  |  |         ||   | |||||||||||| || || || |||||||||||||||||||| || ||  ||  | ||||    |||||  ||| ||||| | ||||||||    || |  |   ||   |   
gtatggcctctcacattttgaaggcttagtcctttagtc-tgtaattgtctgattctaatgtgatgtcttc------catcatactattcttgcagGCCAGTGTTGGACTTGATGATCTGAAGGCTTCTTA-ATGCATTCCTATGCAACAATTACCCACAGAATAAACCTGTCTTACCTGTCTAATGAAATTTAGTG---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76285485|gb|DV025053.1|DV025053
EST:     AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTG                         GCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCT
genomic: AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTGgtatggtctc ... attcttgcagGCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCT
EST: gi|93282355|gb|EB674619.1|EB674619
EST:     AATTTTGCACGACCTTTTTTCCTTTCCTCAAAGAAAACCACAACTTTTTG                         GCGAGCGTCGGTCTTGATGATTTGAAGGCTTCATAGATCAATCTCCATGCT
genomic: AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTGgtatggtctc ... attcttgcagGCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCT
EST: gi|211377924|gb|FL095474.1|FL095474
EST:     AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTG                         GCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCT
genomic: AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTGgtatggtctc ... attcttgcagGCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCT
EST: gi|71771167|gb|DR969104.1|DR969104
EST:     AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTG                         GCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCT
genomic: AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTGgtatggtctc ... attcttgcagGCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCT
EST: gi|211249240|gb|FL481701.1|FL481701
EST:     AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTG                         GCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCT
genomic: AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTGgtatggtctc ... attcttgcagGCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCT
EST: gi|60400894|gb|DN233701.1|DN233701
EST:     AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTG                         GCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCT
genomic: AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTGgtatggtctc ... attcttgcagGCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCT
EST: gi|76283007|gb|DV022575.1|DV022575
EST:     AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTG                         GCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCT
genomic: AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTGgtatggtctc ... attcttgcagGCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCT
EST: gi|211484414|gb|FL480094.1|FL480094
EST:     AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTG                         GCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCT
genomic: AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTGgtatggtctc ... attcttgcagGCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCT
EST: gi|211475757|gb|FL124814.1|FL124814
EST:     AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTG                         GCGAGCGTCGGTCTTGATGATCT
genomic: AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTGgtatggtctc ... attcttgcagGCGAGCGTCGGTCTTGATGATCT
EST: gi|211041270|gb|FL124817.1|FL124817
EST:     AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAA-CCACAACTTTCTG                         GCGAGCGTCGGTCTTGATGATC
genomic: AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTGgtatggtctc ... attcttgcagGCGAGCGTCGGTCTTGATGATC
EST: gi|93282356|gb|EB674620.1|EB674620
EST:     AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTG                         GCGAGCGTCGGTCTTGATGATCTG
genomic: AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTGgtatggtctc ... attcttgcagGCGAGCGTCGGTCTTGATGATCTG
EST: gi|161592264|gb|EY962319.1|EY962319
EST:     ATTTTGCACGACCTTCTCTCCTTTCCTCAAAAGAAAACCACAACTTTCTG                         GCGAGCGTCGGTCTTGATGATC
genomic: ATTTTGCACGACCTTCTCTCCTTTCCTCAAA-GAAAACCACAACTTTCTGgtatggtctc ... attcttgcagGCGAGCGTCGGTCTTGATGATC
EST: gi|211466760|gb|FL298405.1|FL298405
EST:     AATTTTGCACGACCTTCTCTCCTTTCCTCNNNNNNNNCCACAACTTTCTG                         GCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCT
genomic: AATTTTGCACGACCTTCTCTCCTTTCCTCAAAGAAAACCACAACTTTCTGgtatggtctc ... attcttgcagGCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgggtatcttgttaaacaacaactttctggtatggtctctcccaattcttgcagGCGAGCGTCGGTCTTGATGATCTGAAGGCTTCATAGATCAATCTCCATGCTGATTACAACAAAATAAGCATGTCTTACGAAACTCAAAGTGTTGCCGAGG
                                    tctctcccaattctt  CT-rich tract
         ttgttaaa  TA-rich tract