Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtcactatcttgctagatatagcctccatcgccatgctggagatgttgggaggacaaacagatgtaaacaaaataccctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAGAAGACGCAGGGGGTCGACATCGCGGCGTACGGGTCGTCCAAGGTGGTGT

Basic information

species Zea mays
transcript GRMZM2G124434_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 3'ss of exon 6
--------------------------------gtactgtcactatcttgcta-----gatatagcctccatcgccatgctggagatgttgggaggacaaaca------gatgtaaacaaaataccctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAGAAGACGCAGGGGGTCGACATCGCGGCGTACGGGTCGTCCAAGGTGGTGT
                                 ||||    | ||| ||| |     |  | |     || || ||       ||       || | | |||       || |  |||||  ||  |  |  ||||| |||||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||  ||||| || |||||||||||||
gtatctatccctgttctgctaaatcttctcacatactacaccaatcatgcaatgcctgtaaaaattctcaccgtcagatcaatgacaagattagaatagacaatacctaatatcgacaaatgacgat--gaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAGAAGACCCAGGGCGTCGACATCGCGGGTTACGGCTCATCCAAGGTGGTGT

upper sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA20G36740.3 (Glycine max), 3'ss of exon 5
------gtactgtcactatcttgctagatatagcctccatcgccatg------ctggagatgttgggaggacaaacagatgtaaacaaaataccctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAGAAGACGCAGGGGGTCGACATCGCGGCGTACGGGTCGTCCAAGGTGGTGT
          |  |    |||| |    | |    |  |||   ||       ||  ||||  |  |   ||  | || |||   |  |||     |  || ||||||| ||| || |||| ||||||||||| || ||||||||||||||||||||| | || ||  | || ||  | | ||| ||||| ||||| |||||| 
ctttttagtttaccttagtctttcccagttttttttttatcttgataaacagcctcaagattctatgtatacttatag-tgt---ctcaattttgatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAGAAGGCTCAAGGTATTGATATATCAGTGTATGGGTCTTCCAAAGTGGTGC

upper sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA10G30400.1 (Glycine max), 3'ss of exon 5
-----------gtactgtcactatcttgctagatatagcctccatcgccatgctggagatgttgggaggacaaacagatgtaaacaaaataccctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAGAAGACGCAGGGGGTCGACATCGCGGCGTACGGGTCGTCCAAGGTGGTGT
            |||  |   | | |  |    | |   ||  ||   ||   |  ||||  |  ||  | |   |   |||    || |    | | || |||||||| || |  |||| ||||||||||| || ||||||||||||||||||||| | || ||  | || ||  | | ||| ||||| ||||| |||||| 
cttcgtagtttatacc-ttgttctttcccagtttttgatcttgataaacagcgtcaagattctatgaa-atacttaacagtatctcaattgtgatgt-tgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAGAAGGCTCAAGGTATTGATATATCTGTGTATGGGTCTTCCAAAGTGGTGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74242203|gb|DT650117.1|DT650117
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTTTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|4647474|gb|AI622549.1|AI622549
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|67022927|gb|CO451676.1|CO451676
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|76016334|gb|DT943504.1|DT943504
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|149074868|gb|EE163308.2|EE163308
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|18162691|gb|BM332530.1|BM332530
EST:     TATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: TATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|148943578|gb|EC888641.2|EC888641
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTTTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|83278935|gb|DV942943.1|DV942943
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|60346894|gb|DN213867.1|DN213867
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|148946581|gb|EC888918.2|EC888918
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCATCTACTTTTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|113837040|gb|DW959035.1|DW959035
EST:     CGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: CGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|111189030|gb|EE287166.1|EE287166
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|4152128|gb|AI372262.1|AI372262
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAN
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|18167460|gb|BM337299.1|BM337299
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|30031705|gb|CB833556.1|CB833556
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|6827906|gb|AW331549.1|AW331549
EST:     ACACCCTTATCAAGGANAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|67016994|gb|CO445743.1|CO445743
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAAATCGAGAAAGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|67023443|gb|CO452192.1|CO452192
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|18164028|gb|BM333867.1|BM333867
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|76016335|gb|DT943505.1|DT943505
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|78110080|gb|DV528495.1|DV528495
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|71432080|gb|DR813130.1|DR813130
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|148948428|gb|EC893945.2|EC893945
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|13315947|gb|BG410295.1|BG410295
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|31362361|gb|CD446718.1|CD446718
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|18162499|gb|BM332338.1|BM332338
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|211341875|gb|FL422743.1|FL422743
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|211028004|gb|FL427825.1|FL427825
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|83278893|gb|DV942901.1|DV942901
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|86470451|gb|DY236821.1|DY236821
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGG-CCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|67025719|gb|CO454468.1|CO454468
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|149004989|gb|EE039509.2|EE039509
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|67021931|gb|CO450680.1|CO450680
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|71766425|gb|DR964362.1|DR964362
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|78075013|gb|DV503447.1|DV503447
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|3157363|gb|AA979985.1|AA979985
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|211209009|gb|FL476562.1|FL476562
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|76014791|gb|DT941961.1|DT941961
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|31405869|gb|CD484601.1|CD484601
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|148959387|gb|EE010761.2|EE010761
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTTTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|67014813|gb|CO443562.1|CO443562
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
EST: gi|71766874|gb|DR964811.1|DR964811
EST:     ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAG                         GATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG
genomic: ACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 258

CATCCACCACATCCCTGGCCCGGAAGGGGTCCGCGGGCGCAACTCTGACAACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAGAAGACGCAGGGGGTCGACATCGCGGCGTACGGGTCGTCCAAGGTGGTGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 882

CATCCACCACATCCCTGGCCCGGAAGGGGTCCGCGGGCGCAACTCTGACAACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAGAAGACGCAGGGGGTCGACATCGCGGCGTACGGGTCGTCCAAGGTGGTGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 889

CATCCACCACATCCCTGGCCCGGAAGGGGTCCGCGGGCGCAACTCTGACAACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAGAAGACGCAGGGGGTCGACATCGCGGCGTACGGGTCGTCCAAGGTGGTGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 288

CATCCACCACATCCCTGGCCCGGAAGGGGTCCGCGGGCGCAACTCTGACAACACCCTTATCAAGGAGAAGCTTGGCTGGGCCCCGACGATGAAGCTCAAGgtactgtcac ... ctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAGAAGACGCAGGGGGTCGACATCGCGGCGTACGGGTCGTCCAAGGTGGTGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgctggagatgttgggaggacaaacagatgtaaacaaaataccctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAGAAGACGCAGGGGGTCGACATCGCGGCGTACGGGTCGTCCAAGGTGGTGT
                                         tacccttt  CT-rich tract
                             atgtaaacaaaata  TA-rich tract