Sequence
atgc intronic sequence ATGC exonic sequencegtttggttgtttgagtcctacacaattatacacttcattaaacttttatcaaaagatttactggttttatgtgtttattcttttacagAAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G124091_T04 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g55974.1 (Oryza sativa), 3'ss of exon 6
gtttggttgtttgag-tcctacacaattata-cacttcattaaacttttatcaaaagattt-actggttttatgtgtttattcttttacagAAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG
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gtttggacttctaatctcctacaaacttaaagcatctcattaatttgcctttataagctaagaataatcttgtgttatcttctctttgcagAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAG
upper sequence: GRMZM2G124091_T04 (Zea mays), 3'ss of exon 6
lower sequence: AT3G48540.1 (Arabidopsis thaliana), 3'ss of exon 6
---gtttggttgtttgagtcctacacaattatacacttcattaaacttttat-caaaagatttac------tggttttatgtgttt--attcttttacagAAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG
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tatagaaaacttagggaactctgctgcagtttctgttccgaagtatttgtgtgtggatggtttatatgagtttgttttgtgctcctcgaatctcttgcagAAGCTTTATGTGACAATGTTCCCTTGCAATGAATGTGCCAAGATTATTTTACAG
upper sequence: GRMZM2G124091_T04 (Zea mays), 3'ss of exon 6
lower sequence: PP1S426_43V6.1 (Physcomitrella patens), 3'ss of exon 7
------------------------------------------------------------------gtttggttgtttgagtcctacacaattatacacttcattaaacttt-tatcaaaagatttactggtt---ttatgtgtttattctttta-------cagAAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG
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gtaagcttccaggttgtgtcatgcttggcctgattagaaccagtttttcgaacttaaggtgaaaaagctttagtagttga-tccagaagctttttacttttctaaaaatagtatactagtcgttgtttctgtcaagtaagatgcataccttgtgaaatgtggcagAGACTGTACGTGACCCTCTTCCCTTGCAATGAATGTGCCAAGATAATTATTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76912349|gb|DV164688.1|DV164688EST: CTGAGGTTAATGCAATTCTAAATACCAACCATGCTTCAGCGGCTGGACAG AAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATT
genomic: CTGAGGTTAATGCAATTCTAAATACCAACCATGCTTCAGCGGCTGGACAGgtttggttgt ... tcttttacagAAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcattaaacttttatcaaaagatttactggttttatgtgtttattcttttacagAAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG
tttattctttt CT-rich tract
taaacttttatcaaaa TA-rich tract