1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgctttcttgtagcccatggatcatttcttgcacacagcgccgcctcacacgttaccaaaaccaaacatgtatgtgttccattccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG
species | Zea mays |
transcript | GRMZM2G123029_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|149100422|gb|EE186497.2|EE186497
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|78021643|gb|DV490030.1|DV490030
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|110208372|gb|EC890269.1|EC890269
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|14244924|gb|BG842862.2|BG842862
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|148999547|gb|EE036519.2|EE036519
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|211114340|gb|FL479352.1|FL479352
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCGAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|32913325|gb|CF018137.1|CF018137
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCGAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|7204603|gb|AW559186.1|AW559186
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCGAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|149078277|gb|EE167036.2|EE167036
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|211417815|gb|FL246184.1|FL246184
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCGAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|93012558|gb|EB638078.1|EB638078
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|13515812|gb|BG518088.1|BG518088
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|16927660|gb|BM080729.1|BM080729
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTATGCATCAGTGGGTTCEST: gi|211453148|gb|FL447178.1|FL447178
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCGAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|6827002|gb|AW330645.1|AW330645
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCGAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|32859335|gb|CD999016.1|CD999016
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCGAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|45567994|gb|CK985848.1|CK985848
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCGAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|78109241|gb|DV527657.1|DV527657
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACCCCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|149097402|gb|EE183255.2|EE183255
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|40303709|gb|CK348096.1|CK348096
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCGAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|6993891|gb|AW453105.1|AW453105
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCGAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|148980773|gb|EE027343.2|EE027343
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|18180292|gb|BM381502.1|BM381502
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|211489971|gb|FL475496.1|FL475496
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCTTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCGAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|149066691|gb|EE286828.2|EE286828
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|110520668|gb|EE024852.1|EE024852
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|211453149|gb|FL447179.1|FL447179
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCGAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|211401889|gb|FL450336.1|FL450336
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCGAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|60358971|gb|DN225944.1|DN225944
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|6695716|gb|AW288794.1|AW288794
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCGAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|5510772|gb|AI857156.1|AI857156
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|91876727|gb|EB406684.1|EB406684
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|91876845|gb|EB406802.1|EB406802
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|110943954|gb|EE164111.1|EE164111
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTGGGGTTCGCCATCGCAAGCAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCEST: gi|148987680|gb|EE031561.2|EE031561
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
EST: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAG TACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
genomic: GCCTTGCGTTCACCATCGCAAACAAGACCTTCACCCTAACACCCCAGCAGgtgctttctt ... ttccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTC
agcgccgcctcacacgttaccaaaaccaaacatgtatgtgttccattccatccagTACATTGTGAAGCTGGAGCAAGGAGGCCAAACCGTCTGCATCAGTGGGTTCATGGCGTATGACGTGCCACCGCCGCGTGGTCCTCTCTG
gcctcac putative branch site (score: 3)
ttccattcc putative PPT