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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttggtttttatttattgcttcgaaactgtttagttgattattaacttcagatagatggccatattcaccaacagacttaccaatttttggaaatgcagGCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGCTTTAGAGACAACTATTGCAAGCATCTTGACAATAGCAGCGTGGGTATTC

Basic information

species Zea mays
transcript GRMZM2G122935_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G122935_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os11g28990.1 (Oryza sativa), 3'ss of exon 6
---tgttggtttttat--ttattgcttcgaaact--gtttagttgattattaacttcagatagatggccatattcaccaacagacttaccaatttttggaaatgcagGCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGCTTTAGAGACAACTATTGCAAGCATCTTGACAATAGCAGCGTGGGTATTC
    | |  ||| |||   ||||  |||  ||||  || |  || || |||   |    |   |||    | ||||  | | ||   |   | |||||||| | ||||| ||||||||||||||| | | |||||||||||| |||||| | |||||||||| ||||||||| || |||||||||||||| |||   ||||||||||
aatagctcatttatatgaatattaattcacaacttggtctgttttatgattggttctgaa---atg----tgttcattagctgaaccattcagttttggaattacagGCCTCAGCTGAAGCAGACACTTTCTTTTGCTTTGTTGAATTGCTCAGTGGCTTTAAAGACAACTACTGTAAGCATCTTGACAACAGCCAAGTGGGTATTC

upper sequence: GRMZM2G122935_T01 (Zea mays), 3'ss of exon 6
lower sequence: AT1G04830.2 (Arabidopsis thaliana), 3'ss of exon 6
-tgttggtttttatttattgcttcgaaactgtttagttgattattaacttcagatagatggccatattcaccaacagacttaccaatttttggaaatgcagGCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGCTTTAGAGACAACTATTGCAAGCATCTTGACAATAGCAGCGTGGGTATTC
   | |    ||  ||  || |  ||   | |||  |  |   |    |||   |     ||   | |||    || | | ||   |||    | |||||| |    ||||||||||| |||| |||||||||||| |||||||||||||| ||| |||||  ||| ||  | || || ||||||||    ||||| || |
tcttagaagattggttcgtg-tatgatcttttttcttcaaccttgtttttcttcttctcagcttcaatcaatttcatattaactcttttcaaaatatgcagTCCCATGCTGAAGCAGATGCATTCTTTTGCTTTGTTGAATTGTTGAGTGGATTTCGAGACTTCTACTGTCAACAACTCGACAATAGTGTGGTGGGAATCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78110295|gb|DV528710.1|DV528710
EST:     TGGCACCTTTATTTTATGTATTCAAGAATGACCCTGACCCAAGCAACTCA                         GCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGC
genomic: TGGCACCTTTATTTTATGTATTCAAGAATGACCCTGACCCAAGCAACTCAgtaagttttt ... ggaaatgcagGCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGC
EST: gi|76011673|gb|DT938843.1|DT938843
EST:     TGGCACCTTTATTTTATGTATTCAAGAATGACCCTGACCCAAGCAACTCA                         GCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGC
genomic: TGGCACCTTTATTTTATGTATTCAAGAATGACCCTGACCCAAGCAACTCAgtaagttttt ... ggaaatgcagGCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGC
EST: gi|76017397|gb|DT944567.1|DT944567
EST:     TGGCACCTTTATTTTATGTATTCAAGAATGACCCTGACCCAAGCAACTCA                         GCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGC
genomic: TGGCACCTTTATTTTATGTATTCAAGAATGACCCTGACCCAAGCAACTCAgtaagttttt ... ggaaatgcagGCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGC
EST: gi|31628335|gb|CD526557.1|CD526557
EST:     TCAAGAATGACCCTGACCCAAGCAACTCA                         GCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGC
genomic: TCAAGAATGACCCTGACCCAAGCAACTCAgtaagttttt ... ggaaatgcagGCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGC
EST: gi|32928506|gb|CF033318.1|CF033318
EST:     TTTATTTTATGTATTCAAGAATGACCCTGACCCAAGCAACTCA                         GCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGC
genomic: TTTATTTTATGTATTCAAGAATGACCCTGACCCAAGCAACTCAgtaagttttt ... ggaaatgcagGCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcagatagatggccatattcaccaacagacttaccaatttttggaaatgcagGCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGCTTTAGAGACAACTATTGCAAGCATCTTGACAATAGCAGCGTGGGTATTC
                                      aattttt  TA-rich tract