Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggcgtactgcaagcaaattaattgttagatgaattgcttggatttcctttccctgttcatgtttgtggactcttgacctagtaatccgtgtgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACTACAAGTACAATGATGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT

Basic information

species Zea mays
transcript GRMZM2G122871_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G122871_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g37440.1 (Oryza sativa), 3'ss of exon 7
-ggcgtactgcaagcaaattaattgttagatgaattgcttggatttcctttccctgttcatgtttgtggactctt-gacctagtaatccgtgtgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACTACAAGTACAATGATGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT
   | |  | |||    |  |||   |  | | ||    |  ||||   |||| | ||| ||||| || | |    ||   | ||   ||| | | |||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||  ||||||||||
cttcttgttacaattttagcaatatatttaggcatgaacttaattta--ttccattttcttgtttttgaattaacagagacattatcacgtctatttttcagGTTTCTGGGACATGTATGACCCAGAGGGTTACTCTCTGTGGTTCTGTGACTACAAGTACAACGATGAGAACACCGTATCGTTTGTGACGATGAACAAGGT

upper sequence: GRMZM2G122871_T02 (Zea mays), 3'ss of exon 6
lower sequence: AT1G09640.1 (Arabidopsis thaliana), 3'ss of exon 7
------ggcg-tactgcaagcaaattaattgtt-agatgaattgcttggatttcctttccctgttcatgtttgtggactcttgac----ctagtaatccgtgtgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACTACAAGTACAATGATGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT
      || | ||       | |  || || || || |    |    ||   |  |||  || ||    |   | |  | ||  |    ||| || |  |  |    | |||| |||||||||||||| ||||||||||| |||||  | ||||||||||||||||||||||| ||||||||||  || || ||||| || || ||||||||
gtgtgtggtgatatcttcctctacctagtttttcagctttgctatcagggaattatttagctattggaatcaattgttttttatcatgtctaatattgtggctcaaatgcagGATTCTGGGACATGTATGACCCAGAGGGATACTCACTATGGTTCTGTGACTACAAGTACAACGATGAGAACATGGTGTCATTTGTCACGCTCAACAAGGT

upper sequence: GRMZM2G122871_T02 (Zea mays), 3'ss of exon 6
lower sequence: AT1G57720.1 (Arabidopsis thaliana), 3'ss of exon 7
-----ggcgtactgcaagcaaattaattgttagatgaattgcttggatttcctttccctgttcatgtttgtggactcttgacctagta-atccgtgtgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACTACAAGTACAATGATGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT
     || |||||         |||  ||  | ||| || ||   || |     |    || |||  |  |   |||    ||| | |  |   | |   || |||| |||||||||||||| ||||| ||||| |||||  | |||||||||||||| |||||||| ||||||||||  ||||||||||| || || ||||||||
ttagaggggtactcactatggttta--tgggacatgtatggcccagagtc----tgaaagtacattctattaagctcaatgccttgaatgtttttcttcattgcagGATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACTATAAGTACAACGATGAGAACATGGTCTCCTTTGTTACACTCAACAAGGT

upper sequence: GRMZM2G122871_T02 (Zea mays), 3'ss of exon 6
lower sequence: PP1S172_22V6.1 (Physcomitrella patens), 3'ss of exon 5
----ggcgtactgcaagcaaattaattg--ttagatgaattgcttgg-atttcctttccctgttcatg-----tttgtggactcttgacctag--taatccg----------tgtgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACTACAAGTACAATGATGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT
    | | |      |||| || | ||   |||||      |  ||  | |      || || | |||     | | | ||| || | | |    |||   |          ||  | |  |||| |||||||| |||| |||  | ||||| |  || |||||||||||||| |||||||||||||||||||||   ||| | || |||||| |||| |||||
gtacgtcttctaatgagcatatgatttaatttagagcctcagtctgatactgagcacccatgcttatggagaatgtcttgaccctcggcttgtgctaacgtggtggacgggttgaatatgccagGATTCTGGGAAATGTTCGATGCTGAGGGTTGGTCATTGTGGTTCTGTGATTACAAGTACAATGATGAGAACCAAGTCACTTTCGTGACCATGAATAAGGT

upper sequence: GRMZM2G122871_T02 (Zea mays), 3'ss of exon 6
lower sequence: PP1S33_218V6.1 (Physcomitrella patens), 3'ss of exon 6
ggcgtactgcaagcaaattaattgttagatgaattgcttggatttcctttccctgttcatgtttgtggactct--tgacctagt--aatccgtgtgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACTACAAGTACAATGATGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT
 ||    |  |  ||   || |    |||   |  |  |   | || | || | |   | ||||| ||    |  ||| ||| |    |   ||| |||  |||| |||||||| |||| |||| | || || |||||||||||||||||||| |||||||||||||| ||||||   ||  ||||||||||  |||| || ||
-gcactttttagtcattctagtctgcagagtcagagtgtttctctcatgtctcgg---acgtttggggctgatagtgagctaatttggtggttgtatgtggcagGATTCTGGGAAATGTTCGACGCTGAAGGTTACTCTTTGTGGTTCTGTGATTACAAGTACAATGACGAGAACCAAGTAACCTTTGTGACTATGAATAAAGT

upper sequence: GRMZM2G122871_T02 (Zea mays), 3'ss of exon 6
lower sequence: PP1S132_188V6.1 (Physcomitrella patens), 3'ss of exon 6
ggcgtactgcaagcaaattaattgttagatgaattgcttggatttcctttccctgttcatgtttgtggactc-ttgacctag-taatccgtgtgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACTACAAGTACAATGATGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT
    |  || |     | |     ||     |||  | |  |  | | |    | |  || | ||  ||| | || |  | | | ||   ||  |||  ||||||||||||| |||| |||  | || || ||||| |||||||||||||| ||||||||||||||||| |||   ||  | ||||||||| ||||||||||
--gtttttgaatctgcactctggatttcgaaaatgccctctacgttcctgaaatttaaatttgtgccgacccattaatattgctgatgattgcttgtgacagGTTTCTGGGAGATGTTCGATGCTGAAGGTTACTCATTGTGGTTCTGTGATTACAAGTACAATGATGAAAACCAAGTTACGTTTGTGACCATGAACAAGGT

upper sequence: GRMZM2G122871_T02 (Zea mays), 3'ss of exon 6
lower sequence: EFJ14564 (Selaginella moellendorffii), 3'ss of exon 6
ggcgtactgcaagcaaattaattgttagatgaattgcttggatttcctttccctgttcatgtttgtggactcttgacctagtaatccgtgtgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACTACAAGTACAATGATGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT
                              | |    | |  ||||| ||    | |      ||  || | |   || |  ||||  ||       |||| |||||||| ||||| ||||| ||||| |||||  |||||||||| |||||||||||||| ||||||||||| ||  | || |||||  ||||||||||
------------------------------gtacaagtggtgtttccattgatcgcttgaaaatgctgattttgatccca--aatctttg-------cagGATTCTGGGAGATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACTACAAGTACAACGATGAGAACACGGTGCCTTTCGTGACGATGAACAAGGT

upper sequence: GRMZM2G122871_T02 (Zea mays), 3'ss of exon 6
lower sequence: EFJ26267 (Selaginella moellendorffii), 3'ss of exon 5
ggcgtactgcaagcaaattaattgttagatgaattgcttggatttcctttccctgttcatgtttgtggactcttgacctagtaatccgtgtgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACTACAAGTACAATGATGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT
                              | |    | |  ||||| ||    | |      ||  || ||| || ||           |   || |||| |||||||||||||| ||||| ||||| |||||  |||||||||| |||||||||||||| ||||||||||| ||  | || |||||  ||||||||||
------------------------------gtacaagtggtgtttccattgatcgcttgaaaatgctgattct-gatct---------cttcccttgcagGATTCTGGGACATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACTACAAGTACAACGATGAGAACACGGTGCCTTTCGTGACGATGAACAAGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6563987|gb|AW231609.1|AW231609
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|12972753|gb|BG268139.1|BG268139
EST:     AACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: AACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|213183676|gb|FM184595.1|FM184595
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGAGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|8273133|gb|BE012225.1|BE012225
EST:     CTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: CTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|29945783|gb|CB815817.1|CB815817
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|15100293|gb|BI396084.1|BI396084
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60394408|gb|DN227278.1|DN227278
EST:     AGGCTATACTCAAACACAAAGACTTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: AGGCTATACTCAAACACAAAGAC-TAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|67038838|gb|CO465093.1|CO465093
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|211156021|gb|FL463800.1|FL463800
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|31558779|gb|CD527991.1|CD527991
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|211002222|gb|FL464444.1|FL464444
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTATCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|24767125|gb|CA402269.1|CA402269
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|161588518|gb|EY959085.1|EY959085
EST:     CGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: CGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60396672|gb|DN229540.1|DN229540
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60348768|gb|DN215741.1|DN215741
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60344820|gb|DN211793.1|DN211793
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|6601673|gb|AW256069.1|AW256069
EST:     GAGGCTATACTCAAACNCAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|29946811|gb|CB816337.1|CB816337
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|9028776|gb|BE238816.1|BE238816
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|37383021|gb|CF628487.1|CF628487
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|78026291|gb|DV494678.1|DV494678
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60400752|gb|DN233559.1|DN233559
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|37394689|gb|CF634620.1|CF634620
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|24769360|gb|CA404489.1|CA404489
EST:     AAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: AAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|440669|gb|T14690.1|T14690
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|4886129|gb|AI677249.1|AI677249
EST:     GAGGCTATACTCAAAC-CAAAG-CTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|213172899|gb|FM183066.1|FM183066
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGAGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60344627|gb|DN211600.1|DN211600
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|4628217|gb|AI619091.1|AI619091
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTG
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTG
EST: gi|8665808|gb|BE186624.1|BE186624
EST:     AGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: AGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60351042|gb|DN218015.1|DN218015
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|31364144|gb|CD448499.1|CD448499
EST:     GAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|5005627|gb|AI711689.1|AI711689
EST:     GAGGCTATACTCAAAC-CAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTNTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|7216485|gb|AW562607.1|AW562607
EST:     TTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: TTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|116817540|gb|EC860408.1|EC860408
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCGAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60346712|gb|DN213685.1|DN213685
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|6526789|gb|AW216064.1|AW216064
EST:     GAGGCTATACTCAAACNCAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|78180826|gb|DV551199.1|DV551199
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|6466741|gb|AW191401.1|AW191401
EST:     GAGGCTAT-CTCAAAC-CAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|24769231|gb|CA404360.1|CA404360
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|67021735|gb|CO450484.1|CO450484
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|24769803|gb|CA404932.1|CA404932
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|6095391|gb|AW120058.1|AW120058
EST:     AACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: AACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|211436892|gb|FK950627.1|FK950627
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGA-GGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60395615|gb|DN228485.1|DN228485
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|24764687|gb|CA399851.1|CA399851
EST:     AAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: AAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60356823|gb|DN223796.1|DN223796
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|56382561|gb|CV985230.1|CV985230
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGAGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60353529|gb|DN220502.1|DN220502
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|58029725|gb|CX725152.1|CX725152
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGAGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|22133787|gb|BQ833902.1|BQ833902
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60344776|gb|DN211749.1|DN211749
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60349360|gb|DN216333.1|DN216333
EST:     ACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTTTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: ACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60346756|gb|DN213729.1|DN213729
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60354677|gb|DN221650.1|DN221650
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|29945773|gb|CB815812.1|CB815812
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|6095389|gb|AW120056.1|AW120056
EST:     AACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGANCCCAGA-GGCTACTCTTTGTGGTTCTGTGAC
genomic: AACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGA-CCCAGAGGGCTACTCTTTGTGGTTCTGTGAC
EST: gi|31350882|gb|CD435239.1|CD435239
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60346171|gb|DN213144.1|DN213144
EST:     CTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: CTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|24766473|gb|CA401625.1|CA401625
EST:     CCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: CCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60343652|gb|DN210625.1|DN210625
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60347245|gb|DN214218.1|DN214218
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|24767868|gb|CA403003.1|CA403003
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|6095399|gb|AW120066.1|AW120066
EST:     AACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: AACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|7304489|gb|AW600428.1|AW600428
EST:     GAGGCTATACTCAAAC-CAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
EST: gi|60344305|gb|DN211278.1|DN211278
EST:     GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1054

AATCCTCTTGACTTGCTGCCACCAAGCAAGATGGTCCTTGATGACTGGAAGAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACTACAAGTACAATGATGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 659

AATCCTCTTGACTTGCTGCCACCAAGCAAGATGGTCCTTGATGACTGGAAGAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACTACAAGTACAATGATGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 832

AATCCTCTTGACTTGCTGCCACCAAGCAAGATGGTCCTTGATGACTGGAAGAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACTACAAGTACAATGATGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 405

AATCCTCTTGACTTGCTGCCACCAAGCAAGATGGTCCTTGATGACTGGAAGAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtatcatctc ... tgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACTACAAGTACAATGATGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttccctgttcatgtttgtggactcttgacctagtaatccgtgtgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACTACAAGTACAATGATGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT
                         tcttgac  putative branch site (score: 405)
                                 tagtaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggcgtactgcaagcaaattaattgttagatgaattgcttggatttcctttccctgttcatgtttgtggactcttgacctagtaatccgtgtgtgtttcagGTTTCTGGGACATGTACGACCCAGAGGGCTACTCTTTGTGGTTCTGTGACTACAAGTACAATGATGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT

- - - -tgcaagc
- - - - - - - - - - - - - - - - - tgcttgg